Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01654 ATGAAGCCTCAACTCAACGTTGCTGTTGCTCTTGTTATTAGCTTGCTCTGTATTCAGCACTCATTTTGTGATGAACCTTCTGATACTGGACTAAACAAGTGGAAATGTAGATGCTCTTCATTACAAGGGAACAAGATATACTCTCTTGCTAATTGTTCCAAGTCATGTGATTGCCATCCAGATGCTGAAGAGAATGCATCCATATGGACATGCGAATGTGATCCAAACGGGTTTCCTAAAGTGACAGCAGATGTCCATAACCTTAGTTGTTTTAATGCCTGCAATTGCACCTGGGGAACTGTCAGGAAGCCACTAGGTTCAAAGAAACAAATTTCGAGCAAGATTGTAGTAATTTTTCTATCAATATGTGTTATATGCACAACTATTGCATTTCTTACCTCAGTTGTATGTCATGTCTACCGAAGGGACAAAGGTCCTATTCAATCACCAATGATCTCATCAGATAAAGAAACAAGTTACAGTAGTACCACCAACTTGATTAGTCATAGGACTTCTTCAGTGCCAGAAACAAAAGTTGCTATAACTTCTCCTATTAGTCATATTACAGGATGCTTTCAGAAGGCCGCTTTGTTGTTTGGGAGCCAAAGAGAAACCTTTCATGGAAATATTATTCAATTTTCGTTTGCTGAACTGGAAAATGCCACTGAAAACTTCTCAACTTCCAACCTAATTGGACTAGGTGGAAGTAGTTACGTTTACCGTGGTCGGCTGAAAGATGGTAGTAATGTGGCAGTCAAGAGAATAAAAGATCAAAGAGGGCCTGAGGCAGACTCTGAATTTTTTACAGAGATTGAACTATTGTCTAGACTTCATCATTGCCATCTGGTGCCATTGGTGGGATACTGCTCAGAATTAAAAGGAAAAAATGTTCAAAGGCTGCTAGTATTTGAATACATGACTAATGGAAATTTGAGGGACAGGTTAGATGGAATTCTTGGACAAAAAATGGATTGGTCAACTCGCGTTACAATTGCATTAGGAGCTGCAAGGGGCTTGGAGTATCTTCATGAAGCTGCTGCTCCAAGAATTCTGCACAGAGATGTCAAATCAACAAACATTCTTCTGGATAAAAATTGGCAAGCAAAAATAACTGATCTTGGTATGGCTAAAAACTTGAGAGCTGATGACCACCCTAGTTGTTCTGATTCTCCAGCAAGAATGCAAGGAACATTTGGTTATTTTGCACCTGAGTATGCAATTGTTGGGAGAGCCTCTCTTGAGTCAGATGTCTTCAGTTTTGGAGTGGTTCTTCTTGAGCTTATAAGTGGTCGGCAACCCATCCATAAATCTGCAGGCAAAGAAGAAAGTCTTGTTATATGGGCAACTTCACGCTTACAGGATAGTAGGCGAGCATTAACGGAGTTGGCTGATCCACAATTGAACGGGAACTTCCCTGAAGAAGAGCTGCAGATAATGGCATACTTAGCAAAGGAGTGCTTGCTGTTGGATCCTGACACTCGACCAACTATGAGTGAAGTTGTTCAAATTCTTTCAAGTATTTCCCCGGGAAAATCTAGAAGGAGAAGAACCATTCCAGTGAGCCCTTTTCAGGAACCAGAGGACTTGGAGAAGCAAAGACAAGCCCCACCAAGTATATTTCCATCTCGTAATTTATTGCCACTAGATATTGACCATAATCTTCATGTGGGGAACGAAAATAAAGATGTACATACAGTTTCATCTGAGCATCTGAAGAGTTTGATGCTCTTTACTTCAAAAGGTGAGAGCTGGCATGCATCAGATGAAGAAATGGTAGATTTAACCGAGCCTCGTTTTGAATCATTTTATATGATAAACGACAATTTCCCTTGA 1833 0.4032 MKPQLNVAVALVISLLCIQHSFCDEPSDTGLNKWKCRCSSLQGNKIYSLANCSKSCDCHPDAEENASIWTCECDPNGFPKVTADVHNLSCFNACNCTWGTVRKPLGSKKQISSKIVVIFLSICVICTTIAFLTSVVCHVYRRDKGPIQSPMISSDKETSYSSTTNLISHRTSSVPETKVAITSPISHITGCFQKAALLFGSQRETFHGNIIQFSFAELENATENFSTSNLIGLGGSSYVYRGRLKDGSNVAVKRIKDQRGPEADSEFFTEIELLSRLHHCHLVPLVGYCSELKGKNVQRLLVFEYMTNGNLRDRLDGILGQKMDWSTRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGMAKNLRADDHPSCSDSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIHKSAGKEESLVIWATSRLQDSRRALTELADPQLNGNFPEEELQIMAYLAKECLLLDPDTRPTMSEVVQILSSISPGKSRRRRTIPVSPFQEPEDLEKQRQAPPSIFPSRNLLPLDIDHNLHVGNENKDVHTVSSEHLKSLMLFTSKGESWHASDEEMVDLTEPRFESFYMINDNFP 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01654 610 Gene3D Transferase(Phosphotransferase) domain 1 306 518 - -
Gma12g01654 610 CDD STKc_IRAK 231 507 - -
Gma12g01654 610 ProSitePatterns Protein kinases ATP-binding region signature. 231 253 IPR017441 GO:0005524
Gma12g01654 610 Gene3D Phosphorylase Kinase; domain 1 199 305 - -
Gma12g01654 610 ProSiteProfiles Protein kinase domain profile. 225 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01654 610 SUPERFAMILY Protein kinase-like (PK-like) 206 504 IPR011009 -
Gma12g01654 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 350 362 IPR008271 GO:0004672|GO:0006468
Gma12g01654 610 SMART serkin_6 225 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01654 610 PANTHER OS01G0253100 PROTEIN 2 604 IPR045271 GO:0004714|GO:0006468
Gma12g01654 610 Pfam Protein kinase domain 227 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01654 610 MobiDBLite consensus disorder prediction 518 532 - -
Gma12g01654 610 MobiDBLite consensus disorder prediction 512 538 - -
Gma12g01654 610 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 2 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01654 Gma-Chr12 36712449 36716889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01654 1 606 Receptor kinase-like Gene Family AT2G28250 51.634 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Gma12g01654 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01654 - - gmx:100499641 1237.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01654 12 36712449 36716889 Gma12g01654 12 36712449 36716889 ECH
Gma12g01654 12 36712449 36716889 Gma12g00685 12 6047135 6053289 PCT
Gma12g01654 12 36712449 36716889 Gma11g01628 11 17589686 17594224 PCT
Gma12g00685 12 6047135 6053289 Gma12g01654 12 36712449 36716889 PCT
Gma11g01628 11 17589686 17594224 Gma12g01654 12 36712449 36716889 PCT