Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01644 atgttgaatccaactcagtttcaggccaaagaagagaaggctaaagcagctaatgactcgctcagcgagGAGAGTATCATGAAAGAGAATGAGAATGAAGATGATTTAGATTATGAGCTTGATGATGCTTCTATCAATTCAGATAACAAAAACAATATTTTCTTGCCAGAGATGAAGATGGTTAAGGATGAGGATATCGAGCCCAAGGCCTCGAAGAATACTCAGAGGAAAAACAATAATCAGACACTTAGTATGAATGATGACAATGAGAATAGCCTAGGACTAAATGACGGTTCCCTTTGTGAAAGTGATAAGGGAAATCAAAGTAGCATTTCACTGCCAAAATTAGAGAAACTGACAATTGGATCAAAACCACCCAAAGACTTTGTTTGCCCAATCACAGGCCAAACCTATGAAAGAAAAGCAATTCAAGAGTGGCTCAGAACCGGAAACACAACATGCCCCATCATGCGACAACCTCTATCTATAAATATGTTGCCCAAAACAAACTATGTTTTGAAGAGATTCATAACATCATGGAAACAACAAAATCCTGAACTAGCACAAGAATTCTCTAATGCTAACACACCAAGGGGTTCTTCCTATTCTCCATCTGCGAAAGACTTCACAGTGATCTCCACTACACAAAGAACAATTGGTTCACCAAATGAAAGACTTGGAGAAACACTTAACAGTGCAGATTCTGATTTTGATTGCTTGGCTACTCTACTTAAGAACGACTTGGTTGAGGCTGCTCTTCTTATTTACCAGCTAAGGCCAGTTTTTGCTCAGCTTTCAGCACATGAACTTACACCATCTCTTATGCAAGTGATTCAGAACACAAACAAGGGGTCAAATGATTTTCAGTTAGCTATAGACCCCAAAGATGTAGACAGAGAAATTCTTGAGCAAATTTTAATAAGAGGGGATGAATATAGCAGGTCCCTTAATGCTTTGAGTGTTATTTCTCAAAATGGAATTCCAGCCTTAGCGAAGTATTTGGAGAGGATAAAGGGAAGGAGGTTAGTTGTTTCCATACTTTTGTGTTGTATGCAACCTGAAAAAGGTTCCAAGAGCTTGATAGCAGACATAATTGAATTGTCTCCTGTTCTTGAATTATTTCACGGTGGAAATGATAATGTGAGAGGCATCTATGTGGAGTTTCTATTAGAATTGGTTCAATTGAATAGAATCGAATCTAGTTACAATAATCCTTCTCCTCCCTTAACAAGAATGGTAAGTGAATTCACAATGCCTATTCAAGGTTGCACATTGTCAGGGCACACCTTACCTTCGAACACCAAAAAGCTTCAAACACGACAAAGCGTACGGTCTGGGCACGACGGTGGCCCGACATGGGAGACACTATTGACGGAGTGCAATGGAAAGAGCAACGATGTCACTAACGGGTTCGACCGTAGGGTGAGTCGTTAG 1434 0.378 MLNPTQFQAKEEKAKAANDSLSEESIMKENENEDDLDYELDDASINSDNKNNIFLPEMKMVKDEDIEPKASKNTQRKNNNQTLSMNDDNENSLGLNDGSLCESDKGNQSSISLPKLEKLTIGSKPPKDFVCPITGQTYERKAIQEWLRTGNTTCPIMRQPLSINMLPKTNYVLKRFITSWKQQNPELAQEFSNANTPRGSSYSPSAKDFTVISTTQRTIGSPNERLGETLNSADSDFDCLATLLKNDLVEAALLIYQLRPVFAQLSAHELTPSLMQVIQNTNKGSNDFQLAIDPKDVDREILEQILIRGDEYSRSLNALSVISQNGIPALAKYLERIKGRRLVVSILLCCMQPEKGSKSLIADIIELSPVLELFHGGNDNVRGIYVEFLLELVQLNRIESSYNNPSPPLTRMVSEFTMPIQGCTLSGHTLPSNTKKLQTRQSVRSGHDGGPTWETLLTECNGKSNDVTNGFDRRVSR 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01644 477 MobiDBLite consensus disorder prediction 12 27 - -
Gma12g01644 477 MobiDBLite consensus disorder prediction 56 109 - -
Gma12g01644 477 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 63 224 - -
Gma12g01644 477 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 223 398 - -
Gma12g01644 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 188 IPR013083 -
Gma12g01644 477 MobiDBLite consensus disorder prediction 73 109 - -
Gma12g01644 477 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 63 224 - -
Gma12g01644 477 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 223 398 - -
Gma12g01644 477 MobiDBLite consensus disorder prediction 1 37 - -
Gma12g01644 477 SMART Ubox_2 128 180 IPR003613 GO:0004842|GO:0016567
Gma12g01644 477 MobiDBLite consensus disorder prediction 57 72 - -
Gma12g01644 477 ProSiteProfiles U-box domain profile. 112 187 IPR003613 GO:0004842|GO:0016567
Gma12g01644 477 Pfam U-box domain 134 184 IPR003613 GO:0004842|GO:0016567
Gma12g01644 477 SUPERFAMILY RING/U-box 124 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01644 Gma-Chr12 36602918 36608968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01644 116 184 U-box Gene Family AT1G49780 40.244 2.80e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01644 - - gmx:100776142 274.633