Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01642 ATGAAGGACTCTTGGTTTTTCGACAATAACTTTAATGGTCTGTCAGATGAGATTTTTGATGATGTCATCAACTTTTTTGATTTCCCGCTGGAAGACGTGGATGCTAATGGTGTGGAAGAAGACTGGGATGCTCAATTAAAATGCCTTGAAGACCCGCGTTTTGATGTTTATTCAGCATCATCAGCTGGGCTGTGTGCCGAAACTCAAAATGAGAAGCCCCAACTTGGAATGAAGTTATCTGCTTCTAGTAATGGGATTTCCCCAATAAAACAGCTGGCAAAAGCTCCTGGACCAGCATATGGAAAGACCATTCCCCACCAGAATGTCACTTCCAATGGAAAAGATTTGCATCAATTCCAAACCTACACCTACAGCCCAGTTTCGGTTTTTGAAAGTAGCAGTTCGTCCTCAGTTGAGAATTCCAACTTCGATCGACCTGTCATCCCAGTGAAGCGGGCTCGTAGTAAACGTCAGCGTCCTTCAAACTTCAGTCCTCTATTTTCAATTCCTCTCATCGTTAATTTGCCGGCTGTGCGAAAAGATCAAAGGACAGCAGCCTCTGACTCAGATTTTGGAACAAATGTTGCTGGGAATCTATCAAACAAAGTAAAAAAGCAGAGGAAAAAGGATTTGTCCCTGCTATCAGATGTTGAGATGACGAGATCCTCATCACCAGAGTCAGGTCCCCCCAGAAAATGCATGCATTGTGAGGTGACAAAAACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTGTGCAATGCTTGTGGTGTTCGATACAGGTCCGGCCGCCTCTTTCCTGAATACCGGCCGGCAGCTAGCCCGACTTTTGTAGCATCGCTGCACTCAAACTGCCACAAGAAGGTTGTGGAGATGAGAAGCAGAGTCATCCAGGAGCCTGTTAGGTGTTCTATGTTGGCTTCATCAAATCTCCATGGAAATTCTGTAGGATAA 960 0.4531 MKDSWFFDNNFNGLSDEIFDDVINFFDFPLEDVDANGVEEDWDAQLKCLEDPRFDVYSASSAGLCAETQNEKPQLGMKLSASSNGISPIKQLAKAPGPAYGKTIPHQNVTSNGKDLHQFQTYTYSPVSVFESSSSSSVENSNFDRPVIPVKRARSKRQRPSNFSPLFSIPLIVNLPAVRKDQRTAASDSDFGTNVAGNLSNKVKKQRKKDLSLLSDVEMTRSSSPESGPPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSRVIQEPVRCSMLASSNLHGNSVG 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01642 319 CDD ZnF_GATA 232 279 IPR000679 GO:0006355|GO:0043565
Gma12g01642 319 SMART GATA_3 227 277 IPR000679 GO:0006355|GO:0043565
Gma12g01642 319 PANTHER GATA TRANSCRIPTION FACTOR 19 297 - -
Gma12g01642 319 ProSiteProfiles GATA-type zinc finger domain profile. 227 263 IPR000679 GO:0006355|GO:0043565
Gma12g01642 319 ProSitePatterns GATA-type zinc finger domain. 233 258 IPR000679 GO:0006355|GO:0043565
Gma12g01642 319 Pfam GATA zinc finger 233 266 IPR000679 GO:0006355|GO:0043565
Gma12g01642 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 288 - -
Gma12g01642 319 Gene3D - 225 305 IPR013088 GO:0006355|GO:0008270
Gma12g01642 319 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 19 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01642 Gma-Chr12 36570898 36575542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01642 14 297 C2C2-Gata Transcription Factor Family AT1G08000 39.236 2.30e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma12g01642 GATA 3.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01642 - - gmx:100778675 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01642 12 36570898 36575542 Gma12g01642 12 36570898 36575542 ECH
Gma13g02896 13 43543246 43547161 Gma12g01642 12 36570898 36575542 ECH
Gma13g02896 13 43543246 43547161 Gma12g01642 12 36570898 36575542 GST
Gma12g01642 12 36570898 36575542 Gma11g01632 11 17655816 17667496 PCT
Gma11g01632 11 17655816 17667496 Gma12g01642 12 36570898 36575542 PCT