Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01641 ATGAAGGAAACAGACAAGAGTTTGGATCCGCAGCTGTGGCACGCGTGCGCCGGCGGCATGGTTCAGATGCCGCCGGTGAACTCCAAAGTGTTTTATTTCCCGCAGGGACACGCGGAACATGCGCAGTCCAACGTCGATTTCGGAGCGGCGAGGATTCCGATTCCGCCGCTCATTCTGTGCTGCGTGGCAGCTGTGAAGTTCCTCGCCGACCCCGAAACCGACGAGGTCTTCGCCAGGCTGCGGATGGTTCCTCTAAGAAACTCCGAGCTCGACTACGAAGACAGCGACGGTAACGGCGCGGAGGGGTCGGAGAAGCCCGCGTCGTTCGCGAAGACGTTAACTCAGTCCGACGCGAACAACGGCGGCGGGTTTTCCGTTCCGAGGTACTGCGCGGAGACGATATTCCCGCGGCTGGATTACTCGGCTGAGCCGCCGGTGCAGACGGTGATCGCGAAGGACGTGCACGGCGAGGTGTGGAAGTTCCGGCACATTTACCGAGGGACGCCACGTCGGCACTTGCTGACCACCGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTCGTGGCGGGTGATTCTATCGTGTTTCTTCGGGCCGAGAATGGGGATCTTTGCGTGGGGATTCGTAGGGCCAAGAGAGGGGGAGTTGGTGGGGCCGAGGGGCCGTGCGGGTGGAGTAGTTCTGGTGGTGGGCTTGGGCCTGGGCCTGGGCCTTACGGGGCCTTTTCGGGTTTTTTGAGGGAGGAGAGTAAGGTGGTGAGGAGTGGGAGGCCGAAGGTGAGTGGTGAGTCTGTGAGAGAAGCTGTTACTTTGGCTGCTAGTAATCAACCTTTTGAGGTAGTTTACTATCCTCGGGCTAATACTCCAGAGTTTTGTATTAGGACTTCTGCTGTGAGAGGGGCTATGAGGATTCAGTGGTCCTCTGGGATGAGGTTCAAGATGCCCTTTGAGACTGAGGACTCTTCCAGGATAAGCTGGTTCATGGGGACTATTGCTTCTGTTCAGCTTCTTGATCCTATCCGCTGGCCTAATTCACCCTGGAGGCTTCTTCAGGTTACTTGGGATGAGCCAGATTTGCTACATAATGTGAAGCGAGTAAGCCCATGGTTGGTTGAGTTGGTATCAAACGTGCCAATCATCCATCTGGCACCCTTCTCTCCACCAAGGAAGAAGCTTAGGTTTCCACAACACCCAGAGTTTCCCCTTGACTTTCAATTTCCGATACCATCATTTTCAGGCAACCCCTTTGGGTCTAGCACTAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCAGATCTCCACCTTAACAATAAGCTGCAGTTGGGGTTGCTTCCGACTAACGTCCACCAGCTTAATTTGCACACTGGGATTTGTAATGGCAACATCACCAACCATGGTAAGAGTAAAGAAAGTCTATCATGCTTGCTGACCATGGGAAATTCTAACAAGAGTTTGGAGAAATCTGATCATGTGAAGAGACACCAATTTTTGCTTTTCGGTCAACCGATACTCACCGAGCAACAAATCTCTAGATCTTCTAGTGATGTGTTGTCTCAAAATTTTACTGTGACGGATGATGAGAATAAGGAGAAGAAGGAGAAGGGATTTCTTAGTGACTCCCAGTCTTCAGTTTCACCCGGAAAGTCATCTTCTACCACCGAGTTCTCTTGGCAAGTTGGTTCGGATACCAGTCATTGCAAGGTTTTCATAGAGTCAGAGGATGTGGGACGGACCCTTGACTTGTCCTGTCTTGGTTCATATGAAGAGTTGTACATGAGACTGGCTAACATGTTTGGAATAGAAAGGTCTGAGATGTTGAGTCATGTTCTCTACCGTGACGCAGCTGGTGCTCTTAAGCAAACTGGAGAGGAACCCTTCAGTGAGTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAAACAACAAAGATAGTAGAAGGTGGGAGAAAGAAAAATAA 2013 0.5117 MKETDKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQSNVDFGAARIPIPPLILCCVAAVKFLADPETDEVFARLRMVPLRNSELDYEDSDGNGAEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGVGGAEGPCGWSSSGGGLGPGPGPYGAFSGFLREESKVVRSGRPKVSGESVREAVTLAASNQPFEVVYYPRANTPEFCIRTSAVRGAMRIQWSSGMRFKMPFETEDSSRISWFMGTIASVQLLDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNVPIIHLAPFSPPRKKLRFPQHPEFPLDFQFPIPSFSGNPFGSSTSSPLCCLSDNAPAGIQGARHAQIGISLSDLHLNNKLQLGLLPTNVHQLNLHTGICNGNITNHGKSKESLSCLLTMGNSNKSLEKSDHVKRHQFLLFGQPILTEQQISRSSSDVLSQNFTVTDDENKEKKEKGFLSDSQSSVSPGKSSSTTEFSWQVGSDTSHCKVFIESEDVGRTLDLSCLGSYEELYMRLANMFGIERSEMLSHVLYRDAAGALKQTGEEPFSEFMKTAKRLTILTDSNNKDSRRWEKEK 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01641 670 SMART B3_2 109 211 IPR003340 GO:0003677
Gma12g01641 670 PANTHER AUXIN RESPONSE FACTOR 2 661 - -
Gma12g01641 670 CDD B3_DNA 108 209 IPR003340 GO:0003677
Gma12g01641 670 Pfam Auxin response factor 267 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma12g01641 670 MobiDBLite consensus disorder prediction 536 571 - -
Gma12g01641 670 Gene3D - 576 663 - -
Gma12g01641 670 MobiDBLite consensus disorder prediction 554 571 - -
Gma12g01641 670 Gene3D - 304 377 - -
Gma12g01641 670 Gene3D - 107 211 IPR015300 -
Gma12g01641 670 ProSiteProfiles PB1 domain profile. 579 659 IPR000270 GO:0005515
Gma12g01641 670 ProSiteProfiles B3 DNA-binding domain profile. 109 211 IPR003340 GO:0003677
Gma12g01641 670 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 661 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma12g01641 670 Pfam B3 DNA binding domain 109 210 IPR003340 GO:0003677
Gma12g01641 670 SUPERFAMILY DNA-binding pseudobarrel domain 104 210 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01641 Gma-Chr12 36558721 36561798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01641 4 657 B3 DNA Binding Superfamily AT4G30080 60.236 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma12g01641 B3 4.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01641 - - gmx:100778135 1321.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01641 12 36558721 36561798 Gma12g01641 12 36558721 36561798 ECH
Gma13g02897 13 43555246 43558047 Gma12g01641 12 36558721 36561798 ECH
Gma19g01716 19 46454120 46457693 Gma12g01641 12 36558721 36561798 ECH
Gma10g00491 10 4885321 4890628 Gma12g01641 12 36558721 36561798 ECH
Gma13g02897 13 43555246 43558047 Gma12g01641 12 36558721 36561798 GST
Gma12g01641 12 36558721 36561798 Gma12g00677 12 5940115 5943771 PCT
Gma12g01641 12 36558721 36561798 Gma11g01633 11 17685358 17688537 PCT
Gma12g00677 12 5940115 5943771 Gma12g01641 12 36558721 36561798 PCT
Gma11g01633 11 17685358 17688537 Gma12g01641 12 36558721 36561798 PCT