LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma12g01636	ATGGGAGATTATAAGAGTTTTTCATTTTCCAAAATGATGGGCTGCTGTGGTTGCTTTGGATTTGTCCAAAAACCAAGACCGCGTCGGGCTAAACGTAGCATCAGTAATCTTCTCTCCCAGGGGCTATTATTGGATGGAGAAACTGAAGGTGAAGAGACATATAGTGGTGATGTTACTAGTAACTGCACCAGTGGAGATGATAATGAGGTGCAAGCTGTACGCAACCGTTCAGAGGATATTTTGAACTTCAGAGCTGAGAATGGCATGGTTTGCAGGCCGTTTCCTGTTAAGGAGACTTGCAAACTTGATCGCTCAGAGGATGAAAATGGGAACAAGATGATAAATGAATATGTTCGAGAGTATAAAATTGGTTGCGGAAGCTATGGCAAAGTGGCTCTTTATCGAAGTAGTGTTGATGGAAAGCATTATGCAATTAAGTCCTTTCACAAGTCTCACTTACAAAAGCTTCGAGTTGCACCATCTGAGACTGCCATGACTGATGTTCTACGTGAGGTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGTACTTGAATATGTGGAAAGCAAATGGGTGTGCGAGGGTACAGGTCATCCTTGTGCATTAGGTGAAGAGACTGCTAGGAAATACTTGCGTGATATAGTCTCAGGATTAACATATCTCCATGCTCATAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCGTCATGGCACTGTAAAAATAGGGGATTTCAGTGTCAGCCAGGCATTTGAGGATGGCAATGACGAACTTCGTCGATCACCTGGCACTCCAGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCTGACACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATTTTGGGTGAATACCCATTTCTTGGAGACACACTTCAAGACACATATGACAAAATAGTCAATGATCCTTTAGTTCTGCCAGAGGACATTAACCCCCAGTTAAAGAATTTAATAGAAGGATTACTATGCAAAGACCCAGAACTAAGGATGACATTGGGCGATGTTGCTGAGCATATCTGGGTTATTGGAGACGATGGGCCAATTCCCGGGTACTTATGTTGGTGCAAACTGAAAAGGCCCATTAATTTTTCCCCACGGAGACATGTTATGATTGTAGAGGGAGTCTCCAAAGAATCCTTGGGAATTAAGAAAATACAGCTCATGTTGCCAACGATAAGTAGTCAACTAAGTCATGTTTATTTTTGTGTTGAGGAGCATTTTGTGTCTTCTACGGACTTAGAGAATCAAGTAGTGGCATTGCAAAAAAGCAATAAGGCTTTTGAAGATCCGCGCCTTCTCTTCACTTTCAGATGGTTCTGTCTCTGTAGCTCGGAATCAGACGACAGGAGAATTTGCTGGGGGAGAGTTTCAATTTTTCAAATCCTGTCGTTGATTCATTTGGGGGAGGAGGATGGAAAGAAAGTGAATAACCTTCTGGAAATGAATAGAGGGGAAGGAGCGAATGATGGTTTTTCTGGACCTGGACCAAATGATTCGCTTCTTCCTGGTCTTATTGATGATGTTGCCTTGAATTGTCTTGCTTGGGTTAGTGGATCCGATTATGCCGCACTATCATGTATCAATAAAAGGTTCAATAAACTGATCAATAGTGGGTATCTATATGGGTTGAGGAAACAATTGGGGGCTGTGGAGCATTTGGTGTATATGGTTTGTGATCCAAGAGGATGGGTGGCCTTTGACCCCAAGATAAACAGGTGGATGTCATTACCCAAGATACCTTGTGATGAGTGCTTTAACCATGCAGACAAGGAGTCCTTGGCCGTGGGCTGCGAACTGTTAGTCTTCGGTCGGGAACTGATGGAGTTTGCTATTTGGAAGTATAGCATGATTTGTCGTGGTTGGGTGAAGTGCCAGGAGATGAACCAGCCTCGGTGTTTGTTTGGATCTAGTAGTCTTGGATCGATTGCTATTGTTGCTGGGGGAAGTGATAAGTATGGAAATGTTCTAAAATCAGCTGAGTTGTATGACTCTTCAACAGGTATGTGGGAACTTTTACCAAACATGCACACATCGCGTAGATTGTGTTCTGGTTTTTTTATGGATGGCAAATTCTACGTGATTGGTGGAATGTCAAGTACAACTGTTTCATTAAGTTGTGGAGAGGAGTATGATCTCAAGACAAGGAGTTGGCGGAAAATAGAGGGGATGTATCCATATGTTAACGTGGGTGTTCAGGCACCTCCACTTGTGGCTGTTGTGGATAATCAGCTATATGCAGTTGAGCATCTGACTAACATGGTGAAAAAATATGACAAGGAAAAGAACACCTGGAATGAATTGGGGAGGCTTCCAGTCAGGGCGGATTCTTCTAATGGTTGGGGGTTGGCTTTCAAGGTTTGTGGAGAGCAACTTTTGGTTGTGGGTGGACAAAGGGGTCCAGAGGGTGAATCTATTGTGCTGAGTTCATGGTGTCCTAAGTCAGGGATCAGCAATGGCACCATAGATTGGCAGGTACTTGGCGTGAAGGAGCATGTCGGGGTGTTCGTGTATAATTGTGCTGTTATGGGTTGTTGA	2646	0.4297	MGDYKSFSFSKMMGCCGCFGFVQKPRPRRAKRSISNLLSQGLLLDGETEGEETYSGDVTSNCTSGDDNEVQAVRNRSEDILNFRAENGMVCRPFPVKETCKLDRSEDENGNKMINEYVREYKIGCGSYGKVALYRSSVDGKHYAIKSFHKSHLQKLRVAPSETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVESKWVCEGTGHPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLVLPEDINPQLKNLIEGLLCKDPELRMTLGDVAEHIWVIGDDGPIPGYLCWCKLKRPINFSPRRHVMIVEGVSKESLGIKKIQLMLPTISSQLSHVYFCVEEHFVSSTDLENQVVALQKSNKAFEDPRLLFTFRWFCLCSSESDDRRICWGRVSIFQILSLIHLGEEDGKKVNNLLEMNRGEGANDGFSGPGPNDSLLPGLIDDVALNCLAWVSGSDYAALSCINKRFNKLINSGYLYGLRKQLGAVEHLVYMVCDPRGWVAFDPKINRWMSLPKIPCDECFNHADKESLAVGCELLVFGRELMEFAIWKYSMICRGWVKCQEMNQPRCLFGSSSLGSIAIVAGGSDKYGNVLKSAELYDSSTGMWELLPNMHTSRRLCSGFFMDGKFYVIGGMSSTTVSLSCGEEYDLKTRSWRKIEGMYPYVNVGVQAPPLVAVVDNQLYAVEHLTNMVKKYDKEKNTWNELGRLPVRADSSNGWGLAFKVCGEQLLVVGGQRGPEGESIVLSSWCPKSGISNGTIDWQVLGVKEHVGVFVYNCAVMGC	881

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma12g01636	881	Pfam	Protein kinase domain	117	378	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma12g01636	881	PANTHER	SERINE/THREONINE KINASE FAMILY PROTEIN	6	395	-	-
	Gma12g01636	881	SUPERFAMILY	Kelch motif	599	840	IPR015915	GO:0005515
	Gma12g01636	881	SMART	kelc_smart	679	726	IPR006652	GO:0005515
	Gma12g01636	881	SMART	kelc_smart	727	771	IPR006652	GO:0005515
	Gma12g01636	881	CDD	STKc_LKB1_CaMKK	123	378	-	-
	Gma12g01636	881	Pfam	Kelch motif	715	760	IPR006652	GO:0005515
	Gma12g01636	881	Pfam	Kelch motif	667	712	IPR006652	GO:0005515
	Gma12g01636	881	SUPERFAMILY	Protein kinase-like (PK-like)	113	439	IPR011009	-
	Gma12g01636	881	SMART	serkin_6	117	378	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma12g01636	881	SUPERFAMILY	F-box domain	537	622	IPR036047	GO:0005515
	Gma12g01636	881	Gene3D	Transferase(Phosphotransferase) domain 1	217	384	-	-
	Gma12g01636	881	Gene3D	-	587	856	IPR015915	GO:0005515
	Gma12g01636	881	ProSiteProfiles	Protein kinase domain profile.	117	378	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma12g01636	881	PANTHER	MAP/MICROTUBULE AFFINITY-REGULATING KINASE	6	395	-	-
	Gma12g01636	881	ProSitePatterns	Protein kinases ATP-binding region signature.	123	146	IPR017441	GO:0005524
	Gma12g01636	881	Gene3D	Phosphorylase Kinase; domain 1	111	214	-	-
	Gma12g01636	881	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	244	256	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma12g01636	Gma-Chr12	36450642	36468224	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma12g01636	123	385	CBL-interacting serine-threonine protein kinases	AT5G35410	33.840	9.96e-41	152

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-LKB	Gma12g01636		Pkinase	4e-56	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma12g01636	-		K00908	gmx:100776013	818.535