Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01635 ATGAGTGCTCATCAAAAAGAAAAACACAACGCACCTTCGTCCAAACCAACGGTTTCTCATTCACTTCACAAGCGACCGAATCTGCAGCTGGAAATACCGACCAGAACATCGGAAGAGTCTTCTCAGGATCTTGTAAGAATAAGGATGCCACTGACGCCAAGTCCAACTCCTAGTCAGAAGAAAGTGAATTTTCTTGCGACTTCTCGCTCTGTTGATGCTCCAAGGCCTACTTCTTCATCGACCAGAGCCAAATCATCCATGAGAAACATCTTACCGAAATTCGGCTTCCGGAATCGTGCACCATCGCCCGATGTTGAAAAGGTTGTTACTACTGCAGCTCAAGAAGGTTCCTTTTCTGGTCATCAAGAGAAGCCTTCAATCCCAAGATCAGTGTCTCTCACAAAGATGTTTACTCCTAAGATTAAGAGAACGTCTTCGTTGCCAGTGGAAGAACTTGGGCGTGCAAACGTAGAATCTGTTCTTTGTGGAACTCTTGGTGCTTCTCCATGTGGAAGAGAGACCCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTTAATACCAAAGAAAAAGGCATAAGGAGAATGGATTCGGTTTTCCGCATTATTCCATCCACTCCTCGCGTAATTGAAGTGAATGAAACAACAAAGGATACAGAAAATGGTGATGATGGTGAAGATATTGCTGAAGAGGAAGCCGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAGGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGATGAGGTTCGGAACCTCCCTGTCACTCTCTTATGGATCCGAAGTGTTCGAACTCAGAATACTAGAGCAAGGTCCGAGCAGGGAGATGATTTCAGGGCTTGGCAGGAACTCCCAGTGCTTGTCATTGTCAACATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAGAATGAGAACCAAGGCAATTTTCATCTCTCTTCCGTTTGCCTGTGCACTGGGTCTACTCTCCTCCGTAACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAATTTGTTTTGGTGGTCATATTCGCCCACATATTTTACCCCTTGGTTGGTAAGCATGCGGTTTTGGCAATCCTTCTTGCAACGTTTGCTGGGTTTGGCGTGGTGATGAGTGGAAGTTCAATTCTTTTGGAGTCTTCTAGATGGAGAAGAAGATGGCAAGCTTTATCAGAGCTGCAGCGTGGTTCTTCAGCGATGACACAAGAAGGGATATCAAAGGCTAAGAGACTTGTAGTAATTTGTAAAGACGCCTCTGAATTTTGGTCCACCACCACACCCTTCTTCTCATCTCCACCACACCAGAAATGGCTTCCGGAGCTGTGCCAACTACGTTTTCTACCCTCAAGACATGGGATTCCAGTTTGGGGTTTGCAAAAAGCATGGATTTTGTGA 1533 0.454 MSAHQKEKHNAPSSKPTVSHSLHKRPNLQLEIPTRTSEESSQDLVRIRMPLTPSPTPSQKKVNFLATSRSVDAPRPTSSSTRAKSSMRNILPKFGFRNRAPSPDVEKVVTTAAQEGSFSGHQEKPSIPRSVSLTKMFTPKIKRTSSLPVEELGRANVESVLCGTLGASPCGRETQGMIARSRSVPVNTKEKGIRRMDSVFRIIPSTPRVIEVNETTKDTENGDDGEDIAEEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKDEVRNLPVTLLWIRSVRTQNTRARSEQGDDFRAWQELPVLVIVNMLAYFCFLEQLLVGRMRTKAIFISLPFACALGLLSSVTSSTMVKSRFIWIYASVQFVLVVIFAHIFYPLVGKHAVLAILLATFAGFGVVMSGSSILLESSRWRRRWQALSELQRGSSAMTQEGISKAKRLVVICKDASEFWSTTTPFFSSPPHQKWLPELCQLRFLPSRHGIPVWGLQKAWIL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01635 510 SMART ringv_2 234 283 IPR011016 GO:0008270
Gma12g01635 510 MobiDBLite consensus disorder prediction 14 40 - -
Gma12g01635 510 PANTHER OS02G0165000 PROTEIN 3 448 - -
Gma12g01635 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 290 IPR013083 -
Gma12g01635 510 Pfam RING-variant domain 235 282 IPR011016 GO:0008270
Gma12g01635 510 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 448 - -
Gma12g01635 510 ProSiteProfiles Zinc finger RING-CH-type profile. 227 289 IPR011016 GO:0008270
Gma12g01635 510 CDD RING_CH-C4HC3_MARCH 235 283 - -
Gma12g01635 510 SUPERFAMILY RING/U-box 231 286 - -
Gma12g01635 510 MobiDBLite consensus disorder prediction 1 86 - -
Gma12g01635 510 MobiDBLite consensus disorder prediction 52 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01635 Gma-Chr12 36409014 36418260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01635 223 289 C3H Transcription Factor Family AT2G37950 45.588 1.17e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01635 - - gmx:100782610 871.692