Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01628 ATGGCCAAAGACGTTGAGCAGGTTACAGAGCAAGGTGAATACTCCGCGAAGGATTACCATGACCCACCTCCGGCGCCGTTGATCGACCCAGATGAGCTCACTAAGTGGTCCTTGTACAGAGCCGCCATAGCTGAGTTCATAGCAACACTCCTTTTCCTTTACATCACCGTGTTGACCATTATTGGCTACAAGAGACAGAGTGACACCAAAATCCCCGGTAACACCGAGTGCGACGGCGTTGGCATTTTGGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGCATCTCTGGGGGACACATCAACCCTGCGGTGACATTCGGGTTGTTCCTGGGACGCAAGGTGTCTTTGGTGAGGGCGTTGTTGTACATGATAGCACAGTGCGCCGGTGCAATCTGCGGTGCTGGGTTGGCCAAAGGGTTCCAGAAATCGTACTACAACAGGTACGGAGGTGGAGTTAACACTGTTAGCGATGGCTACAACAAAGGTACCGCTTTGGGAGCTGAGATAATTGGTACCTTTGTTCTTGTCTACACCGTTTTCTCCGCCACTGATCCTAAGAGGAGCGCTAGGGACTCTCATGTTCCTGTGTTAGCACCACTTCCCATTGGGTTTGCCGTCTTCATGGTTCACTTGGCTACAATCCCTGTCACTGGAACCGGCATTAACCCTGCAAGGAGTTTCGGACCAGCTGTGATCTTCAACAACGACAAAGCCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTTGTTGGAGCTGCGGTGGCTGCATTCTACCATCAATACATTCTTAGAGCTGCTGCAATCAAAGCTCTTGGATCATTCAGGAGCAACACTTAA 864 0.515 MAKDVEQVTEQGEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSYYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAFYHQYILRAAAIKALGSFRSNT 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01628 287 PANTHER AQUAPORIN PIP2-7 1 287 - -
Gma12g01628 287 MobiDBLite consensus disorder prediction 1 25 - -
Gma12g01628 287 TIGRFAM MIP: MIP family channel proteins 44 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma12g01628 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Gma12g01628 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma12g01628 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma12g01628 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma12g01628 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma12g01628 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma12g01628 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma12g01628 287 SUPERFAMILY Aquaporin-like 32 273 IPR023271 -
Gma12g01628 287 Pfam Major intrinsic protein 32 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma12g01628 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 287 IPR034294 -
Gma12g01628 287 MobiDBLite consensus disorder prediction 1 17 - -
Gma12g01628 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Gma12g01628 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01628 Gma-Chr12 36307836 36309077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01628 1 285 Major Intrinsic Protein MIP AT2G37170 78.947 1.15e-168 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01628 K09872 - gmx:732604 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02903 13 43629859 43631913 Gma12g01628 12 36307836 36309077 GST
Gma12g01628 12 36307836 36309077 Gma12g00670 12 5833323 5835873 PCT
Gma12g01628 12 36307836 36309077 Gma11g01642 11 17791663 17793361 PCT
Gma12g00670 12 5833323 5835873 Gma12g01628 12 36307836 36309077 PCT
Gma11g01642 11 17791663 17793361 Gma12g01628 12 36307836 36309077 PCT