Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01619 ATGATGTCTCAAGAAGCAATACCTGCTCCTTCCAACAATAACAACCTCAGAGACTCCACGGTTCAACTTCATGAACCAAACTCAAACCCTAATCCTAACCCTAATTCGGTTAAGAGAAAAAGAAGCCTACCCGGAACACCAGATCCGAATGCAGAAGTGATTGCTCTGTCGCCAAAGTCGCTGATGGCTACCAACCGATTCATCTGCGAAGTATGCAACAAGGGTTTCCAGAGGGACCAGAACCTGCAGCTGCACCGGCGAGGGCACAACTTGCCGTGGAAGCTGCGGCAGAGAAACAAGGAAGAGGTGGTGAAGAAGAAGGTGTACGTTTGTCCAGAGAAGACTTGTGTGCACCACGACCCTTGCAGAGCCCTGGGGGACCTCACCGGGATAAAAAAGCACTTCAGTAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGTACAATATTCTCCAGGAAGGACAGCTTTGTAACGCATAGGGCTTTTTGTGACGCCATGGCGGAGCAAAATGCGAGGCTTCCGTCGGTTTTGTCAAACCTTGGAAGCGAGATTTTGATGAATGCTGCTCAAGCTCCAAGAGTAATGCCACAGGGTTTACAATTACATGGGTTTCATTCAGAGTTTGGTGGGCCAGGCCAAGAACCATACATTGGAAATTTTGCGGATGTGAACCATCATGAGCATAAGCTAAGGATGCCACTATGGCTAGACCAGACCAATAATCCTCTTCAGCTTAATCATCATCATCCTCTAAGCGTTTCAAGCAACTCTTCAAGTTTGTTCTCACCAGGAACAACTTTGGCTGAAGTGAATAACATGTTTGGGACATCGTCGTCGTCACAGGGACAGTGGCTGAATTACCGATACCCCCCAGAAGCAATATCATTTACACATGCCAATGTTTCTATGGCTCATGGGCTGAAGCTAGAGCAAGAAGAAAACAAAGGAAACTTGTCGCATAGCGTGAGCTCTTTGTACCCAAGTCACATGGAATCTGCAAGGATATTGAGTGATAATAATAATTCGGCCTTCGACAACTCCAACTTTGGCTTGTTGGACCCGAACAACATCTCAAGCACGTCCAGCAACAACAACCGCCACAACAATAACGTGGTTGAAATTCAGAAATTGTTCAGGCAAGGAAACCAGCTGGCTGAGAACTTCAACCACATCGTGAATTCCCAAGCAAGCACCAACATTGGAGATCAAGGGTTTTCATTGAGTAGCATGAATAAGGGCTTGGAGCACATGGTGATGCCGCGGATTGAAGAGTGGGAAAGTGGAGAACCAAAAAGAATGGAGAATCAACAGGTACTACAATCAAGTACTTCCAACACCGAAGAGCACTTAACCAAAGATTTCATGGGTGTTGGAGCAGTGATGAACCTGCAAAGCCAGTTCCATGGACATTACTGA 1503 0.4637 MMSQEAIPAPSNNNNLRDSTVQLHEPNSNPNPNPNSVKRKRSLPGTPDPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRNKEEVVKKKVYVCPEKTCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMAEQNARLPSVLSNLGSEILMNAAQAPRVMPQGLQLHGFHSEFGGPGQEPYIGNFADVNHHEHKLRMPLWLDQTNNPLQLNHHHPLSVSSNSSSLFSPGTTLAEVNNMFGTSSSSQGQWLNYRYPPEAISFTHANVSMAHGLKLEQEENKGNLSHSVSSLYPSHMESARILSDNNNSAFDNSNFGLLDPNNISSTSSNNNRHNNNVVEIQKLFRQGNQLAENFNHIVNSQASTNIGDQGFSLSSMNKGLEHMVMPRIEEWESGEPKRMENQQVLQSSTSNTEEHLTKDFMGVGAVMNLQSQFHGHY 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01619 500 MobiDBLite consensus disorder prediction 1 40 - -
Gma12g01619 500 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Gma12g01619 500 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Gma12g01619 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Gma12g01619 500 Gene3D Classic Zinc Finger 46 119 - -
Gma12g01619 500 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 27 427 - -
Gma12g01619 500 Gene3D Classic Zinc Finger 122 201 - -
Gma12g01619 500 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Gma12g01619 500 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 427 - -
Gma12g01619 500 MobiDBLite consensus disorder prediction 1 50 - -
Gma12g01619 500 SMART c2h2final6 144 164 IPR013087 -
Gma12g01619 500 SMART c2h2final6 109 139 IPR013087 -
Gma12g01619 500 SMART c2h2final6 67 89 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01619 Gma-Chr12 36214065 36216411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01619 29 201 IDZ Gene Family AT3G50700 82.184 1.01e-108 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma12g01619 zf-C2H2_jaz 8.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01619 K25870 - gmx:100815213 971.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01619 12 36214065 36216411 Gma12g01619 12 36214065 36216411 ECH
Gma13g02917 13 43734906 43737745 Gma12g01619 12 36214065 36216411 GST
Gma12g01619 12 36214065 36216411 Gma12g00625 12 5210681 5213421 PCT
Gma12g01619 12 36214065 36216411 Gma11g01359 11 11839451 11841738 PCT
Gma12g00625 12 5210681 5213421 Gma12g01619 12 36214065 36216411 PCT
Gma11g01359 11 11839451 11841738 Gma12g01619 12 36214065 36216411 PCT