Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01617 ATGTCCGTCATCGACATTCTCTTCCGCGTGGATGACATATGTAAAAAATATGACAAATACGACATCGATAAGCAGCGCGAGCTCAACGCCTATGGCGACGACCTCTTCGCTCGCCTCTACGCTGCTGTCGAATCCAGCATACAATCCGCTCTCAATAAATCCGAGGTTGCTTCCACGGAGAAGAACAGGGCATCTGCTGCGGCTTTGAATGCGGAGGTTCGTCGAACCAAAGGTAGACTCATGGACGAGCTTCCTAAACTCCGCAAATTGGTCCATAAGAAGGTTAAAGGTCTCACAAAAGAGGATATGGCCATACGTCAGGATCTTGTTCTGGCATTGCCAGAGAGAATCCAAGCAATACCAGATGGTATTTCTGGTGCTGCTGTTCAAACTGCAGGATGGACTGCTACCTCATCTCAGCCGCATATCAAGTTTGATTCATCAGAGGGGCATCTTGACAGTGATTATTTCCAGCAAAGTGAAGAATCCAGTCAGTTCCGACAAGAGTATGAGATGCGCAGGACGAAACAGGATGAAGGACTTGATATCATATCAGAGGGACTGGAAACCTTGAAGGATCTGGCACAGGATATGAATGAGGAAATTGATCGGCAAGTTCCTTTAATGGATGAAATTGACAGAAAGGTGGATAGGGCAGCAGCTGATGTGAGAAACACTAACGTAAGGCTGAAGAAAACTCTCACCGAGATAAGGTCTAGTCGAAATTTCTGCATCGACATCGTTCTGCTCTGTGTTCTTCTTGGAATCGTTTTGTATTTATACAATGCTCTGAGGTGA 798 0.4599 MSVIDILFRVDDICKKYDKYDIDKQRELNAYGDDLFARLYAAVESSIQSALNKSEVASTEKNRASAAALNAEVRRTKGRLMDELPKLRKLVHKKVKGLTKEDMAIRQDLVLALPERIQAIPDGISGAAVQTAGWTATSSQPHIKFDSSEGHLDSDYFQQSEESSQFRQEYEMRRTKQDEGLDIISEGLETLKDLAQDMNEEIDRQVPLMDEIDRKVDRAAADVRNTNVRLKKTLTEIRSSRNFCIDIVLLCVLLGIVLYLYNALR 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01617 265 PANTHER SYNTAXIN-72 1 262 - -
Gma12g01617 265 ProSitePatterns Syntaxin / epimorphin family signature. 177 216 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gma12g01617 265 Pfam SNARE domain 208 258 IPR000727 -
Gma12g01617 265 SMART tSNARE_6 166 233 IPR000727 -
Gma12g01617 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 171 233 IPR000727 -
Gma12g01617 265 Gene3D - 171 232 - -
Gma12g01617 265 SUPERFAMILY SNARE fusion complex 164 232 - -
Gma12g01617 265 CDD SNARE_Qc 176 232 - -
Gma12g01617 265 Coils Coil 181 201 - -
Gma12g01617 265 PANTHER SYNTAXIN 1 262 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01617 Gma-Chr12 36176153 36179322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01617 1 265 SNARE and Associated Proteins AT3G09740 67.041 1.78e-135 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01617 K08506 - gmx:100777251 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01617 12 36176153 36179322 Gma12g01617 12 36176153 36179322 ECH
Gma13g02919 13 43751757 43754673 Gma12g01617 12 36176153 36179322 GST