Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01613 ATGGAAATTGATCTGAATGATGCAGTGACGAGTGAGGCTGAAAAGAGTGCGTCTTGCAATGGGGAGTGTGAGAAAGGTGCTGCTTTGTCATCTCCAACATGTTCATCTTCTGGCTCCTCCTCCACACGTGTGTCTTCTTCTTATATTGAGCTTTGGCATGCTTGTGCTGGCCCCCTTACTTCCCTCCCGAAGAAAGGGAATGTGGTGGTGTATTTCCCACAAGGGCACTTAGAACAAGCTGCATCCTTCTCTCCCTTTTCACCAATGGAGATGCCAACCTATGATCTTCAGCCACAGATCTTTTGTAGAGTTGTCAATATTCAGCTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCTGAGTTGGCAGGGATGTATATGGAGGGAAAAGAGCTTGAGAAATTGGGAGCAGATGAAGAGGGAAATGAAACAACACCTACAAAGTCAACCCCTCACATGTTTTGCAAAACTCTTACCGCCTCAGATACCAGCACTCATGGGGGGTTCTCTGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGAAGCAAAGACCTTCTCAAGAGCTTGTTGCCAAAGACTTGCATGGTGTGGAGTGGAAATTTCGACATATTTACAGAGGTCAGCCAAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGAGATGCAGTTCTCTTTCTTAGGGGTGAAAATGGAGAATTGAGATTGGGAATCCGGAGAGCTGCTCGACCAAGAAATGGTCTTCCCGAATCAATTGTTGGTAGCCAGAGTTATTATCCCAATTTCCTTTCTTCTGTGGCTAATGCTATATCAGCGAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCGGATTTTGCTGTGCCCTACCAAAAATATATCAAAAGCATCAAGAATCCAGTGACCATCGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCTCCCGAAAGAAGGTGCACTAGTGGCATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCTAAGTCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGATTAATCATCAAGATAGAGTGTCTCCCTGGGAGGTTGATCCTTCTGCATCTCTCCCTCCCCTGAGCATTCAATCCTCCAGAAGGCTGAAGAAACTGAGGCCAGGTCTGCTGGCTGCCGCACCCAATCACCTCACCACTGGAAGCAGTGGATTTATGGACTCTGAGGAGTCGGTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTATGTCACTATATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGAGATCAGATCTCCAAGTCATCCTAATCTTGCTTCAACTGGAGTGAGAAAGATTGCTGCTGCTGAGTTTATGAGGGTTCACCCTTCTAGTTATGCAGGCTTCACGGAAACTAACATGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCGTTTAGATCCCTGGCAGGAAAGGTTGATTTGAACTTCGGTTCTTGGGGCAAACCCAATGTCAGTTACACAAATTACAACCTGCATCAGGCAACCAAACCTAACTTTCACTCTTTTGGACCAGAAGTTGTTCAAACTGCATATTTCCCTTATGGTGATATTCACAAAGCTGGTCAAGGTAGCAGCATGTTGTGCTCTAATCCAACCAATTTCCAACGAGAGGATATCCCATTTAACACTCCTTCCATTCAGTCAGGCATCACAATCCCAAATGAGCAGAAGCTGCAGGACAATATTTCTGGTGCTGCTTCTTTAGGGGCAAACATGAGGATTCCAAATGATGACAATTTCAAGGGGAAGGTAAACGCATGTAAACTATTTGGATTTCCCTTGTCCAGGGAGACTACCGCCCAAAATTTACAGAACTCTTCCAAAAGAAGCTGCACAAAGGTGAGCCATGATGATAGCAACAGAGTTATATTGTGA 2037 0.4438 MEIDLNDAVTSEAEKSASCNGECEKGAALSSPTCSSSGSSSTRVSSSYIELWHACAGPLTSLPKKGNVVVYFPQGHLEQAASFSPFSPMEMPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAELAGMYMEGKELEKLGADEEGNETTPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKKQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGSQSYYPNFLSSVANAISAKSMFHVFYSPRASHADFAVPYQKYIKSIKNPVTIGTRFKMKFEMDESPERRCTSGIVTGMSDLDPYKWPKSKWRCLMVRWDEDIEINHQDRVSPWEVDPSASLPPLSIQSSRRLKKLRPGLLAAAPNHLTTGSSGFMDSEESVRSSKVLQGQENTGFMSLYYGCDTVTKQPEFEIRSPSHPNLASTGVRKIAAAEFMRVHPSSYAGFTETNMFPRVLQGQEICPFRSLAGKVDLNFGSWGKPNVSYTNYNLHQATKPNFHSFGPEVVQTAYFPYGDIHKAGQGSSMLCSNPTNFQREDIPFNTPSIQSGITIPNEQKLQDNISGAASLGANMRIPNDDNFKGKVNACKLFGFPLSRETTAQNLQNSSKRSCTKVSHDDSNRVIL 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01613 678 Pfam B3 DNA binding domain 162 263 IPR003340 GO:0003677
Gma12g01613 678 Gene3D - 326 398 - -
Gma12g01613 678 PANTHER AUXIN RESPONSE FACTOR 10 672 - -
Gma12g01613 678 Gene3D - 160 264 IPR015300 -
Gma12g01613 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 672 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma12g01613 678 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677
Gma12g01613 678 SUPERFAMILY DNA-binding pseudobarrel domain 153 274 IPR015300 -
Gma12g01613 678 Pfam Auxin response factor 288 370 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma12g01613 678 SMART B3_2 162 264 IPR003340 GO:0003677
Gma12g01613 678 CDD B3_DNA 160 262 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01613 Gma-Chr12 36077843 36084183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01613 45 668 B3 DNA Binding Superfamily AT5G60450 59.019 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma12g01613 B3 1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01613 - - gmx:100812909 1340.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01613 12 36077843 36084183 Gma12g01613 12 36077843 36084183 ECH
Gma13g02923 13 43789998 43795584 Gma12g01613 12 36077843 36084183 GST
Gma12g01613 12 36077843 36084183 Gma12g00630 12 5270323 5277237 PCT
Gma12g01613 12 36077843 36084183 Gma11g01354 11 11764968 11771172 PCT
Gma12g00630 12 5270323 5277237 Gma12g01613 12 36077843 36084183 PCT
Gma11g01354 11 11764968 11771172 Gma12g01613 12 36077843 36084183 PCT