Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01612 ATGGTGAAACCCTTAATAAATTGTGGCAAAGAAGAGGAACTTGCAGAAACAAGGAAACGATTTGTGTCCATTGAACTTAGACGCGAGCAAACGCACACCAACACGCAAATTGATCGCTGCTGGAGGTGGCATGCGCTAGCTTCCTGGGCCTTGCTTGCGGATTTCTCTTCGTTTTTGCTGAAGATTCTGTGCAAAATGGATTGGGTAGCCAGTTGCAAGGAAAAATTGCAATATTTCCGTTTAAAAGAGCTCAAAGATGTGCTCACTCATTTGGGACTTTCAAAACAGGGAAAGAAGCAGGATCTTGTTGATAGGATTTTAGCTATTCTCTCAGAGGACCAAGTTTCCAAATTGTGGACCAAGAAGAATGCTGTTGGAAAACAACAAGTGGCCAAATTAGTGGATGAGACGTATAGAAAGTTGCAGGTATCTGGGGCCATTGATCTATCATCAAAGGGACAGGGTGCCTCAGATAGCAGTAATGGGAAAATTAAAGGTGAAATTGACAATTCCTTTCAATCAGATACGAAGATTCGCTGTCTCTGTGGAAATGTATTAGATACAGAGCCATTGGTCAAGTGTGAAGATACAAAATGCCATGTGTCGCAGCACATCAACTGTGTTATTATTCCAGAGAAACCTATGGATGGAATCCCACCCGTTCCTGATAAATTCTACTGTGAAATATGTCGACTCGATCGGGCAGACCCGTTTTATGTTTCAGCAACACACCTATTGTTTCCAGTGAAGTTGACCACAACCAATATTCCCACCGATGGAACCAATCCGGTACAGAGTGTGGAAAGAACGTTTCAACTCACAAGAGCAAACAAGGAGCTGGTATCAAAATCAGAATATGATGTTCAGGTTTGGTGTATGCTTTTGAATGACAAGGTTTCATTCAGGATGCAATGGCCACAATTTGCAGATCTAAAGGTCAATGGTCTTCCTGTTCGTGCAATTAACAGACCTGGTTCACAGTTGCTTGGGGCTAATGGTCGTGATACTGGTCCAGTTATCACGCCATATACAAAGGACGGAATTAACAAGATTTCCTTAACAGGGTGTGATGCTCGCATATTCTGTTTAGGGGTCCGTATTGTTAAAAGACTCAGCATGCCAGAGGTCCTAAGCATGATTCCAGAGGAGTCTGATGGTGAGCGTTTTGAAGATGCTCTTGCACGTGTCTGTTGTTGTGTTGGGGGTGGAAATGCAAATGATAATGCTGATAGTGATAGTGATTTGGAAGTTGTTTCAGATACTTTTAGCATCAATCTCCGTTGCCCAATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTCAAACCTTGTGTTCACATTGGTTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATGAACGGTCAAGGAAGTGGCAGTGCCCCATATGCGTTAAAAATTATGCTTTGGAGAATATGATTATTGACCCTTACTTCAATCGCATCACTACTCTGATGAAAAATTGTGGTGAAGAGATTGCAGAGGTTGAGGTGAAGCCTGATGGTTGTTGGCGTGTCAAGGCTAAGAATGAAAGTGAACGCCAGGAGTTGGGGACTCTTGCTCAATGGCACCATCCTGATGGATCCCTCATTGTTTCGACTGATGAAGTCAAGAGCATGGAAAATTTAAAGCTCAAACAGGAAGGTCTTTCAGATAGTCCTATTGCTGGCTTAAAACTTGGCATCAGGAAGAATAGTAATGGTGTTTGGGAAGTCAGCAAACCTGAGAACACAAACACCTCTTCTGGTAATAATAGATTGAATGAGGATTTTGAAAATCATGAACATGTTATTATTCCAATGAGCAGCAGTGACACTGGAAGTGGCCGGGATGAAGATGATCCTAGCATAAATCAGGGTGGTGGTGAGCATATTGGTTATTCTACTACCAATGGGATTGAAATGAATTCTGTGTTTAACAATAATATAGATTCAGCTTATGGATATACTGTTAATAACGCATCTGCTACGATGGGTGATGCAAAAATTATTATTCTTAGTGATTCAGAAGAAGACAGTGATGTATTGATTTCTCATACTCCTATATCTGGGTACAGAAATAATCAAACTAGTGATGCAGTTGATGTTTACTCCGTGCTACAGCCTGGAATTATTGATCCATATACAGAAGATCACAATCCTGGTGGAAATCCGACCTTGGGAGTTTTTAATAATCCCAGTGAAGATGATTTTGGGATGCCCCCCCTCTGGCCATTGCAATCTGGAACTCCGGCAGTCTCAGGATTCCAATTATTCAGTTCTGAAGTGGAGGATGTTTCAGATGCATTGATTGATTTGCATCATGGCAATATTAATTGTTCCTCATCATTGAATGGTTATATGTTGGCTCCTGATACTGCTTTGGGATCTAGCACTCTGGTACCAGATTCCTCAGCAGGTCGACCTGATGATGATTTAAATGGTGGCTTGGTTGACAATCCACTGGCATTTCCAAGAGAAGATCCATCCCTTCAGATTTTTCTCCCTCCAAAACCAGCAGAATCATCTATGCAGCATGAACTGAGAGATCATGCAGACATGTCAAATGGTGTCTTCATTGAGGATTGGATCTCTCTTCGTCTTGGAGGCAGTACCAGTGGCAGTAATGGTGACATTTCCACTGCAAATGGATTGAATTCCAGACAGCAAATTACACCCAGAGAAAATGCTGGAGATTCTTTGACAGATGCCGCTCCTTTGCTTCCTGGTATGAATGATGCCCCGCCCAAATCTTCCTTCAGATTCCGAGTAGAGGAAATGGAAGATGATGTGGTCTGA 2796 0.4202 MVKPLINCGKEEELAETRKRFVSIELRREQTHTNTQIDRCWRWHALASWALLADFSSFLLKILCKMDWVASCKEKLQYFRLKELKDVLTHLGLSKQGKKQDLVDRILAILSEDQVSKLWTKKNAVGKQQVAKLVDETYRKLQVSGAIDLSSKGQGASDSSNGKIKGEIDNSFQSDTKIRCLCGNVLDTEPLVKCEDTKCHVSQHINCVIIPEKPMDGIPPVPDKFYCEICRLDRADPFYVSATHLLFPVKLTTTNIPTDGTNPVQSVERTFQLTRANKELVSKSEYDVQVWCMLLNDKVSFRMQWPQFADLKVNGLPVRAINRPGSQLLGANGRDTGPVITPYTKDGINKISLTGCDARIFCLGVRIVKRLSMPEVLSMIPEESDGERFEDALARVCCCVGGGNANDNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCVHIGCFDLEVFVEMNERSRKWQCPICVKNYALENMIIDPYFNRITTLMKNCGEEIAEVEVKPDGCWRVKAKNESERQELGTLAQWHHPDGSLIVSTDEVKSMENLKLKQEGLSDSPIAGLKLGIRKNSNGVWEVSKPENTNTSSGNNRLNEDFENHEHVIIPMSSSDTGSGRDEDDPSINQGGGEHIGYSTTNGIEMNSVFNNNIDSAYGYTVNNASATMGDAKIIILSDSEEDSDVLISHTPISGYRNNQTSDAVDVYSVLQPGIIDPYTEDHNPGGNPTLGVFNNPSEDDFGMPPLWPLQSGTPAVSGFQLFSSEVEDVSDALIDLHHGNINCSSSLNGYMLAPDTALGSSTLVPDSSAGRPDDDLNGGLVDNPLAFPREDPSLQIFLPPKPAESSMQHELRDHADMSNGVFIEDWISLRLGGSTSGSNGDISTANGLNSRQQITPRENAGDSLTDAAPLLPGMNDAPPKSSFRFRVEEMEDDVV 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01612 931 MobiDBLite consensus disorder prediction 873 919 - -
Gma12g01612 931 SMART sap_9 76 110 IPR003034 -
Gma12g01612 931 MobiDBLite consensus disorder prediction 606 631 - -
Gma12g01612 931 CDD PHD_Bye1p_SIZ1_like 179 230 - -
Gma12g01612 931 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 238 IPR013083 -
Gma12g01612 931 Pfam SAP domain 79 107 IPR003034 -
Gma12g01612 931 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 74 880 - -
Gma12g01612 931 SMART PHD_3 179 231 IPR001965 -
Gma12g01612 931 ProSiteProfiles Zinc finger SP-RING-type profile. 411 494 IPR004181 GO:0008270
Gma12g01612 931 SUPERFAMILY SAP domain 66 129 IPR036361 -
Gma12g01612 931 SUPERFAMILY FYVE/PHD zinc finger 172 234 IPR011011 -
Gma12g01612 931 MobiDBLite consensus disorder prediction 873 896 - -
Gma12g01612 931 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 74 880 - -
Gma12g01612 931 Pfam MIZ/SP-RING zinc finger 424 472 IPR004181 GO:0008270
Gma12g01612 931 Gene3D SAP domain 66 139 IPR036361 -
Gma12g01612 931 ProSiteProfiles SAP motif profile. 76 110 IPR003034 -
Gma12g01612 931 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 512 IPR013083 -
Gma12g01612 931 ProSitePatterns Zinc finger PHD-type signature. 180 230 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01612 Gma-Chr12 36062425 36074203 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01612 - K22403 gmx:100811996 1699.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01612 12 36062425 36074203 Gma12g01612 12 36062425 36074203 ECH
Gma13g02924 13 43799337 43807855 Gma12g01612 12 36062425 36074203 GST
Gma12g01612 12 36062425 36074203 Gma12g00633 12 5299691 5310080 PCT
Gma12g01612 12 36062425 36074203 Gma11g01351 11 11736875 11747304 PCT
Gma12g00633 12 5299691 5310080 Gma12g01612 12 36062425 36074203 PCT
Gma11g01351 11 11736875 11747304 Gma12g01612 12 36062425 36074203 PCT