Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01609 ATGGAGGGGATGAACTTCAGTTCTTTATACAATCCTCAACTTGCCTCTAGCTCTAAGAAGAGTTACAGTAAGCAAGAGTATAATCATTCAGGGGAGCATCATCATCTCAATGAAGAAGGTTATATGTCTCCCTCTTTCAATCTGCGGAATATTTCAAAGCTCATTCTTCCCCCACTGGGTGTTTCAAGCCAGAATCCAGTTAACTCAAAAGGATGGATCATATCACCAATGGATTCCAGATACAGGTGTTGGGAGAGTTTTATGGTTCTTCTGGTAGCTTATTCTGCATGGGTGTATCCCTTTGAAGTTGCTTTCATGCACAAGTCTTCTAATATGAAAATCTACATTGCGGACAGTGTTGTTGATCTTTTCTTCGGTATTGATATTGTTTTGACATTCTTCGTGGCTTACATTGATCGAACCACTCATCTACTAGTTCGAGACAAGAAGAAGATTGTAGTGAGATACTTGTCTACATGGTTCGTGATGGATTTGGCATCAACTATACCATACGAGGCAATTGGATATTTGTTCACTGGCAAACGGAAATTGGGTCTCCCATACTTCCTCTTGGGTCTGTTTAGATTTTGGAGAATCAGACGGGTCAAGCAATACTTCACAAGGCTTGAGAAAGACATCAGGTTCAGCTATTTCTGGGTCCGATGTGCTAGGCTTCTTTCTGTAACACTTTTTTCAATTCATTGTGCTGGTTGTCTCTATTACATGCTAGCTGATCGTTACCCCCACCAAGGAAAGACATGGATTGGAGCTGTGAACCCAAACTTCCGAGAGACAAGCCTTCGGATCAGATACATTTCGGCCATGTACTGGTCCATCACTACCATGACCACTGTAGGTTATGGTGACCTCCACGCCGTCAACACCCTAGAAATGATCTTCATTATTTTCTACATGCTCTTTAACCTTGGCCTAACAGCTTACTTGATTGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGTACCATGGAGTTTAGAAATAGCATTGAAGCAGCATCAAATTTCGTGAGCCGAAATCGGTTGCCTCCAAGGTTAAAAGAGCAGATCTTGGCTTATATGTGCTTAAGATTTAAGGCAGAGAACTTGAATCAGCATCAGCTTATTGAACAGCTTCCGAAATCGATTTGCAAAAGCATCTGCCAGCATTTGTTTTTTGCAACTGTAGAGAAAGTCTATCTTTTCAAAGACGTCTCAAAAGAAATTCTTTTGTCCCTGGTTGCAAAAATGAAGGCAGAATACATACCACCAAGAGAGGATGTTATCATGCAAAATGAAGCACCAGATGATATTTACATTATAGTCTCTGGCGAAGTGGAGATCATCCATACTGAAATGGAGAGAGAAAGAATTTTGGGGACTCTACATACTGGGGACATGTTTGGAGAGGTTGGTGCACTTATTAGTAGACCTCAGAGCTTTACCTACAGAACCAAGACTCTAACACAGCTCCTGAGACTCAAAACCAATACTCTTATGGAAGCAATGCAGATTAAAAGAGAAGACAGACAAATACTCAAAAATTTTCTTCAGCATATCAAGCAGCTTAAGGATCTGAGTATCAAAGATTTGATGGTGGAGAATGTGGAAGAAGAGGACCCTAACATGGCTGTGAACTTGTTAACTGTGGCTAGCACTGGCAATGCTGCTTTTCTTGAGGAGCTTCTAAGAGCAGGTTTGGATCCTGACATTGGAGACTCCAAAGGGAAAACTCCATTGCACATAGCAGCATCAAAAGGGCATGAAGAGTGTGTTAAAGTCTTACTCAAGCATGCATGCAACATGCATATAAAAGACATGAATGGTAACACTGCAATATGGGATGCTATAGCATCAAAACATTACTCCATATTCCGGATCCTCTTCCAGCTTTCTGCTGTCTCTGATCCTAACACAGCGGGCGATCTCCTGTGTACAGCAGCAAAAAGAAATGAATTAACAGTGTTGACCGATCTTCTAAAGCAAGGACTAAACGTTGACTCCAAAGATCACCATGATACAACTGCAATCCAAATTGCCATGGCAGAAAATCATGTGGACATGGTTCATTTGCTTGTCATGAATGGTGCAGATGTCTCTGATGTGCATAACCATGAATTTTGTTCATCCACCTTAGATGAAATGCTGCAGAAGCGTGAAATTGGGCATCTAATTAATGTAACTGAGGTCATGCGCAGTGGAGTTGTATTAAAGGGGAAACATCAAGAACAGGAGCTCAATGGAGGAAGATCTAATGGACTAAAGTTTCCAAGGGTAAGCATATATAGAGGTCACCCTGTAGTTAGAAGAGAAAAAGGTTCGGTGGAAGCTGGGAAGCTAATAAGGTTGCCTGATTCATTAGAGGAACTCAAAACTATTGCAGGTGAAAAATTTGGGTTTGATGCAAAAGATGCAATGGTGACAAATGAAGAAGGAGCAGAAATAGATTCCATTGATGTGATCAGAGATAATGACAAACTTTTTTTTGTTGAATAA 2496 0.4091 MEGMNFSSLYNPQLASSSKKSYSKQEYNHSGEHHHLNEEGYMSPSFNLRNISKLILPPLGVSSQNPVNSKGWIISPMDSRYRCWESFMVLLVAYSAWVYPFEVAFMHKSSNMKIYIADSVVDLFFGIDIVLTFFVAYIDRTTHLLVRDKKKIVVRYLSTWFVMDLASTIPYEAIGYLFTGKRKLGLPYFLLGLFRFWRIRRVKQYFTRLEKDIRFSYFWVRCARLLSVTLFSIHCAGCLYYMLADRYPHQGKTWIGAVNPNFRETSLRIRYISAMYWSITTMTTVGYGDLHAVNTLEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVSRNRLPPRLKEQILAYMCLRFKAENLNQHQLIEQLPKSICKSICQHLFFATVEKVYLFKDVSKEILLSLVAKMKAEYIPPREDVIMQNEAPDDIYIIVSGEVEIIHTEMERERILGTLHTGDMFGEVGALISRPQSFTYRTKTLTQLLRLKTNTLMEAMQIKREDRQILKNFLQHIKQLKDLSIKDLMVENVEEEDPNMAVNLLTVASTGNAAFLEELLRAGLDPDIGDSKGKTPLHIAASKGHEECVKVLLKHACNMHIKDMNGNTAIWDAIASKHYSIFRILFQLSAVSDPNTAGDLLCTAAKRNELTVLTDLLKQGLNVDSKDHHDTTAIQIAMAENHVDMVHLLVMNGADVSDVHNHEFCSSTLDEMLQKREIGHLINVTEVMRSGVVLKGKHQEQELNGGRSNGLKFPRVSIYRGHPVVRREKGSVEAGKLIRLPDSLEELKTIAGEKFGFDAKDAMVTNEEGAEIDSIDVIRDNDKLFFVE 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01609 831 SUPERFAMILY cAMP-binding domain-like 328 518 IPR018490 -
Gma12g01609 831 ProSiteProfiles KHA domain profile. 758 831 IPR021789 -
Gma12g01609 831 Gene3D Jelly Rolls 368 542 IPR014710 -
Gma12g01609 831 SUPERFAMILY Ankyrin repeat 536 704 IPR036770 -
Gma12g01609 831 Pfam Ion transport protein 82 330 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gma12g01609 831 Pfam KHA, dimerisation domain of potassium ion channel 757 829 IPR021789 -
Gma12g01609 831 ProSiteProfiles Ankyrin repeat region circular profile. 672 700 - -
Gma12g01609 831 CDD CAP_ED 401 513 IPR000595 -
Gma12g01609 831 PANTHER POTASSIUM CHANNEL AKT1 32 831 IPR045319 GO:0005249|GO:0006813
Gma12g01609 831 PANTHER POTASSIUM CHANNEL AKT2/3-LIKE 32 831 - -
Gma12g01609 831 PRINTS EAG/ELK/ERG potassium channel family signature 118 128 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma12g01609 831 PRINTS EAG/ELK/ERG potassium channel family signature 129 138 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma12g01609 831 PRINTS EAG/ELK/ERG potassium channel family signature 271 288 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma12g01609 831 PRINTS EAG/ELK/ERG potassium channel family signature 297 308 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma12g01609 831 PRINTS EAG/ELK/ERG potassium channel family signature 315 324 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma12g01609 831 ProSiteProfiles Ankyrin repeat profile. 672 704 IPR002110 GO:0005515
Gma12g01609 831 SMART cnmp_10 401 518 IPR000595 -
Gma12g01609 831 PRINTS Ankyrin repeat signature 576 591 IPR002110 GO:0005515
Gma12g01609 831 PRINTS Ankyrin repeat signature 688 702 IPR002110 GO:0005515
Gma12g01609 831 ProSiteProfiles Ankyrin repeat region circular profile. 575 606 - -
Gma12g01609 831 Gene3D - 82 324 - -
Gma12g01609 831 Gene3D - 544 720 IPR036770 -
Gma12g01609 831 Pfam Ankyrin repeats (3 copies) 551 631 IPR002110 GO:0005515
Gma12g01609 831 ProSiteProfiles Ankyrin repeat profile. 575 607 IPR002110 GO:0005515
Gma12g01609 831 SUPERFAMILY Voltage-gated potassium channels 76 324 - -
Gma12g01609 831 ProSiteProfiles cAMP/cGMP binding motif profile. 401 503 IPR000595 -
Gma12g01609 831 SMART ANK_2a 672 701 IPR002110 GO:0005515
Gma12g01609 831 SMART ANK_2a 542 571 IPR002110 GO:0005515
Gma12g01609 831 SMART ANK_2a 608 639 IPR002110 GO:0005515
Gma12g01609 831 SMART ANK_2a 575 604 IPR002110 GO:0005515
Gma12g01609 831 Pfam Cyclic nucleotide-binding domain 421 504 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01609 Gma-Chr12 35974520 35981480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01609 38 580 Ion Channels AT4G22200 74.000 0.0 843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01609 K21867 - gmx:100811465 1644.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01609 12 35974520 35981480 Gma12g01609 12 35974520 35981480 ECH