Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01605 ATGATTCTGGCTAAGGGAATATGTTGTTTGGTTGGTACTGAAATGAGGCATGGTGAAGCCAATTCGGGCCAGGGTCCCAAGGTCAATTTGTTGCAGCATGCCAATGCTCTTGAGAATTTCTCCTCCCAAGCCAAATTTTTGAGCTCCACTTTTCTGTTTTCTGTCCCACCTAAGAAGCCACACCACGAACAACCAAACCCCGGGTTTGTATTTCGACGAAGTGAAACTATTCAAGGTTCACAGAGAGTACAGGTCGAGAAGGCTTTGGCTGCTCATTCAAGTCTACAAAATTCTAGTAGGAACTATGTCCAACCAGGAAAAACTCAGGTTACTCCTCAGCTTCATGAAGATAGGAGAACAACTTCCTTCCATGGAGGCTATGAGAATGGCAACCATAGATGTCCTGATGTTGCTGCAACTCCAATTGTTAACAATCATAATTCTCGGGGTTTGGATGGTTCGGTAAACAATCATACTAATTACACAGGCCAAATCAACAAGTCTTCCAACTGCATGGCTGTAGATATTGATGATGATGATTCTCTCTTTAAGAACATTGATGTTGACCAAATTGTTGAGGACTATTGCACTCCCAAACCATCAATATCCAAGCTTCCTCCTATAACACCAACTGCCGATAAAGATAATTTTGCTAGACAGGGGGATGATGTTTTGCCACCGGAACTGTGTTTAGATTGCGTGCATGGGTACATGTTAGGGTTTTGCCCTGAAGCAGCTAGCCATTTGCAGGATATGAAGGATAATCTAATTGCAATCTTTAATGAGCTGCTTGACAATGGTGAAAACCTCAATTCTACACAGATAGCAAAGCTTCGCCATGATAGGTCACAGCTCAATAAGCAAATTCAGCAGCTTGAAAAATATATTCATTCTGGTAATCTTAATGAGGAAAGGCAAAAGTCACATTTTTCTGCATCCACGGCACCACCTACATCTTTTGTGTATGAAACACCTCAGCAAACTGTCCTCTGTAATGGATCTAAGAGATATGATACTGAGGCTTATATGGGTAATGGGACATATGGGTCGTCGTTCCAGTCTCTTCCACCTTTTTCTGTAGATAATTGTAGCATGCCATCAGGTTCCGTGGGGAGGGAAGTGTTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGACAAACGCTGGAGCAGCTACGATTTTTCTTGGACAAAAGAGTTAGAGGTTAATAATAAAAAAGTATTTGGAAATCACTCATTTCGCCCCAATCAAAGAGAGATCATTAATGCCTCAATGAGTGGATGCGATGTTTTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACATATCAGTTACCAGCTCTTATTCATCCCGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCGGCTGCTTACTTAAGTGCCAATATGGAATGGACTGAACAGCAGGACATCCTCCGAGAACTTAATTCTGATTATTGTAAATACAAGTTATTATATGTTACACCTGAAAAGGTTGCCAGAAGTGATAATCTTCTGCGACACTTGGACAATTTACATTTTCGTGAATTGCTTGCAAGGATCGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCATTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTCGTACAAGCACTTGGTCTTGTTAACTGCATCATTTTTCGGCAAAGTTTTAATCGCCCAAACTTAAGGTATTCTGTTATCCCCAAGACCAAAAAGTGTTTAGAGGACATTGACAAATTCATTAGGGAGAATCATTTTGATGAATGTGGCATTGTCTATTGTCTTTCACGAATGGACTGTGAAAAGGTAGCTGAAAAATTACAGGAATGTGGGCATAAATGTGCATTTTATCATGGTAGCATGGATCCTGTTCAGCGTGCCTCTGTTCAAAAGCAGTGGAGCAAAGATGAGATCAATATAATTTGTGCTACTGTAGCATTTGGAATGGGTATCAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAACATTCATCCTGTGTATTATATTATACCTACAGTGATTATATACGAGTTAAGCATATGTTAAGCCAAGGAGCAATAGAGCAAAGTTCCATGACATCTGGATACAACCGTTCAAATATGATAAATTCAGGAAGGATACTAGAAACAAATACTGAAAACCTTGTGCGAATGGTTAGTTATTGTGAAAATGATGTTGATTGTCGGCGCCTTCTGCAGCTTGCTCATTTTGGGGAGAAGTTCAATTCTTCAACTTGTCTGAAAACATGTGATAATTGCTTGAAGATCACAAGTTTCATTGAAAAGGATGTCACAGAGATTGCAAAGCAATTGGTTGAACTTGTTAAGCTAACAGGACAGAGGTTCTCATCATCTCATATATTAGAAGTGTATCGTGGTTCCTTAAGCCAAATGGTCAAGAAACACCGGCATGAGAGTGTGAGCCTTCATGGTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGCATATTGCATCATCTTGTTGTGGAGGATTTTCTTTGGGAGGAAGTAAAAAAAAGTGATTTTTATGGATCAGTATCATCAATATTGAAGGTAAATGAGCCCAAGATCCATAATCTGTTTGCTGGGCAGAGAATTATATTGAGATTCCCATCCTTGGTAAAGGCATCAAAACCAGGGAAATCTGATGCAACTCCAGCTAAGGGTTCTCTGACTTCTGGAAAGCTGAATGTTATGCAAATTGACCCTCCTTCACCTCAAACTGAAGTGGATGATATTCTTTCAGCTAAGTTATACAATGCCCTGCGGTTGTTGAGGAAAAGTCTTGTTACAGAAGCTGGAGACGGTGTCATGCCTCACCACATATTTGGTAATGCTACGTTGCTTCTGATAAGCAAGAGAGTGCCGAGAAGAAAAGAAGAACTCCTTGATATCAATGGCATTGGCAAGGCTAAGGTAAGCAAGTATGGGGATCAGTTACTAGAAAGCATTGAAAAAACCATAAATGAACATTACAAGTTGGACAAAGTCAGTAGCGGCAGCAAAGGAAGTTCAGATTCTACCAAAAAGAGACGACTGTCAAACGGAAATCCAGATGCAAATGCTGAGGATGATGACGCCCCCACCAAAAGTACAGGTCGTTCAAAGAAAAGGATGGTAAAGAGACAAAACAGAAAAGCTGTAATATATGATTCTCCAGAGGAAGATTATTTTCAAGGATGCCCTGATGAAGACCTAGATTTTGACATCATAGAAATTGATGCATTAGATCAAGTGACTTGTAAAAATGCTGCAGGAAGAGTACTACCTCAATGGACAGCATCTTGA 3501 0.4039 MILAKGICCLVGTEMRHGEANSGQGPKVNLLQHANALENFSSQAKFLSSTFLFSVPPKKPHHEQPNPGFVFRRSETIQGSQRVQVEKALAAHSSLQNSSRNYVQPGKTQVTPQLHEDRRTTSFHGGYENGNHRCPDVAATPIVNNHNSRGLDGSVNNHTNYTGQINKSSNCMAVDIDDDDSLFKNIDVDQIVEDYCTPKPSISKLPPITPTADKDNFARQGDDVLPPELCLDCVHGYMLGFCPEAASHLQDMKDNLIAIFNELLDNGENLNSTQIAKLRHDRSQLNKQIQQLEKYIHSGNLNEERQKSHFSASTAPPTSFVYETPQQTVLCNGSKRYDTEAYMGNGTYGSSFQSLPPFSVDNCSMPSGSVGREVFIPKIIEVNYIEGSGDKRWSSYDFSWTKELEVNNKKVFGNHSFRPNQREIINASMSGCDVFVLMPTGGGKSLTYQLPALIHPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQDILRELNSDYCKYKLLYVTPEKVARSDNLLRHLDNLHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLRYSVIPKTKKCLEDIDKFIRENHFDECGIVYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPVQRASVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQHSSCVLYYTYSDYIRVKHMLSQGAIEQSSMTSGYNRSNMINSGRILETNTENLVRMVSYCENDVDCRRLLQLAHFGEKFNSSTCLKTCDNCLKITSFIEKDVTEIAKQLVELVKLTGQRFSSSHILEVYRGSLSQMVKKHRHESVSLHGAGKHLAKGEASRILHHLVVEDFLWEEVKKSDFYGSVSSILKVNEPKIHNLFAGQRIILRFPSLVKASKPGKSDATPAKGSLTSGKLNVMQIDPPSPQTEVDDILSAKLYNALRLLRKSLVTEAGDGVMPHHIFGNATLLLISKRVPRRKEELLDINGIGKAKVSKYGDQLLESIEKTINEHYKLDKVSSGSKGSSDSTKKRRLSNGNPDANAEDDDAPTKSTGRSKKRMVKRQNRKAVIYDSPEEDYFQGCPDEDLDFDIIEIDALDQVTCKNAAGRVLPQWTAS 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01605 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 392 749 IPR027417 -
Gma12g01605 1166 MobiDBLite consensus disorder prediction 1066 1117 - -
Gma12g01605 1166 Gene3D HRDC domain 980 1067 IPR044876 -
Gma12g01605 1166 SMART RQC_2 833 943 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gma12g01605 1166 SMART ultradead3 413 616 IPR014001 -
Gma12g01605 1166 CDD DEXHc_RecQ 408 607 - -
Gma12g01605 1166 Gene3D - 608 827 IPR027417 -
Gma12g01605 1166 ProSiteProfiles Rhodanese domain profile. 640 675 IPR001763 -
Gma12g01605 1166 Gene3D - 831 940 IPR036388 -
Gma12g01605 1166 Pfam DEAD/DEAH box helicase 419 587 IPR011545 GO:0003676|GO:0005524
Gma12g01605 1166 MobiDBLite consensus disorder prediction 1076 1104 - -
Gma12g01605 1166 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 425 600 IPR014001 -
Gma12g01605 1166 ProSiteProfiles HRDC domain profile. 983 1065 IPR002121 GO:0003676
Gma12g01605 1166 Gene3D - 381 607 IPR027417 -
Gma12g01605 1166 Pfam RecQ zinc-binding 742 824 IPR032284 -
Gma12g01605 1166 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 409 884 IPR004589 GO:0004386|GO:0006310
Gma12g01605 1166 Pfam RQC domain 830 942 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gma12g01605 1166 SUPERFAMILY HRDC-like 987 1060 IPR010997 GO:0000166|GO:0044237
Gma12g01605 1166 CDD SF2_C_RecQ 608 740 - -
Gma12g01605 1166 Pfam HRDC domain 987 1055 IPR002121 GO:0003676
Gma12g01605 1166 PANTHER DNA HELICASE RECQ FAMILY MEMBER 113 1133 - -
Gma12g01605 1166 SMART helicmild6 650 731 IPR001650 -
Gma12g01605 1166 Coils Coil 275 295 - -
Gma12g01605 1166 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 113 1133 - -
Gma12g01605 1166 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 539 548 IPR002464 -
Gma12g01605 1166 Pfam Helicase conserved C-terminal domain 624 730 IPR001650 -
Gma12g01605 1166 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 625 772 IPR001650 -
Gma12g01605 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 874 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01605 Gma-Chr12 35907241 35920777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01605 639 754 Eukaryotic Initiation Factors Gene Family AT3G19760 22.414 1.41e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01605 K10901 - gmx:100817867 2300.4