Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01563 ATGGGTGCAAAACGGCAACAACCCAGTGAATGGGTGAAAGGTAAACTTGTAGGGTGTGGATCTTTTGGCAATGTCCATTTGGCAATGAACAAAACCACCGGTGGGCTTTTTGTTGTGAAATCACCACATTCCAGGGCTGAACGCCATGCTTTGGATAAAGAGGTGAAAATCCTAAACACTTTAAATTCATCACCATACATTGTCCAATGTTTGGGGACCGAGGAGGAGGAGGAAGACCAAGGCAAGCTCAATGTTTTTATGGAGTACATGGCCGGGGGTAATTTGGCAGACATGGTGCACAAGTTTGGTGGCTCATTAGATGAAGAGGTGGTTCGGGTGTATACCAGGGAAATTCTTCATGGGTTAGAGCATCTTCATCAACATGGAATTGTGCACTGCGACCTCAAGTGCAAGAACGTGCTTTTGGGATCATCTGGCAACATCAAGTTGGCGGATTTTGGATGTGCAAAAAGGGTAAAGGAGGACTCAGCAAATTGTGGTGGGACTCCTCTGTGGATGGCTCCTGAAGTATTGAGGAACGAGTCTGTGGATTTTGCTGCGGATATATGGTCCTTGGGATGTACAGTTATTGAGATGGCTACTGGCACACCCCCTTGGGCTCATCAGCTTTCAAATCCAATAACTGCTGTGCTCATGATTGCCCACGGCGATGGGATACCTCACTTTCCACCCCATTTCTCCAAGGAGGGTTTCGATTTCTTGAGCAGGTGCTTCCAGAGACAACCCAATAAGAGGTCTACGGTTCAGGACTTACTTACCCATCCTTTTGTTTCAACGCCATCTTCTCAACAACAATATGCACCTTCCTCCTCTCCGTCCACAGTCAAAGAAACTTCAAAGGAGAATCGTTCTTCAATCACAAACACATTTGCATCTCATCATGATGACCCCAAAGGAATACCGGTATGTAAACCCCAAGACATTGCATTGGGCTCATCAGGGAATTGGATTACTGTTAGATCAGGCTGA 990 0.4626 MGAKRQQPSEWVKGKLVGCGSFGNVHLAMNKTTGGLFVVKSPHSRAERHALDKEVKILNTLNSSPYIVQCLGTEEEEEDQGKLNVFMEYMAGGNLADMVHKFGGSLDEEVVRVYTREILHGLEHLHQHGIVHCDLKCKNVLLGSSGNIKLADFGCAKRVKEDSANCGGTPLWMAPEVLRNESVDFAADIWSLGCTVIEMATGTPPWAHQLSNPITAVLMIAHGDGIPHFPPHFSKEGFDFLSRCFQRQPNKRSTVQDLLTHPFVSTPSSQQQYAPSSSPSTVKETSKENRSSITNTFASHHDDPKGIPVCKPQDIALGSSGNWITVRSG 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01563 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Gma12g01563 329 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE 4 297 - -
Gma12g01563 329 MobiDBLite consensus disorder prediction 265 312 - -
Gma12g01563 329 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 297 - -
Gma12g01563 329 SMART serkin_6 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01563 329 PIRSF TyrPK_CSF1-R 9 117 - -
Gma12g01563 329 PIRSF TyrPK_CSF1-R 104 307 - -
Gma12g01563 329 ProSiteProfiles Protein kinase domain profile. 11 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01563 329 SUPERFAMILY Protein kinase-like (PK-like) 9 297 IPR011009 -
Gma12g01563 329 Gene3D Transferase(Phosphotransferase) domain 1 4 307 - -
Gma12g01563 329 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Gma12g01563 329 Pfam Protein kinase domain 13 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01563 329 MobiDBLite consensus disorder prediction 265 299 - -
Gma12g01563 329 CDD STKc_MAPKKK 10 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01563 Gma-Chr12 35341532 35342521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01563 8 265 MAP Kinase Kinase Kinase AT1G54960 43.590 1.84e-68 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gma12g01563 Pkinase 2.7e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01563 - K20716 gmx:100804518 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01563 12 35341532 35342521 Gma12g01563 12 35341532 35342521 ECH