Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01539 ATGGCTTCCAAGACCACAATTCATTGCTGCTTCCGCGGTGAAGACACACGCAATAGCTTCACTGGTTTTCTTTTTCAAGCTCTTAGTAGAAAAGGCACCATTGATGCATTCAAAGATGGTAAAGATCTCAAGAAAGGCGAATCCATAGCGCCAGAGCTGATCCAAGCCATTCAAGGGTCTCGCCTTTTCTTCATTGTGGTGTTTTCAAACAACTATGCTTTCTCAACTATCCGAAAAAAGCTACAATATGCAGAGATTGAAGATCTTGAAAAGATAACAAATATACTGGGTCACAAATTTTCAAGTCTTCCAAATGATGATCTGGTTGGGATGGAATCTTGTGTTAAAGAATTAGCAAAGCTTTTACGTTTGGGGTCCGTTAATGACATTCAAGTTGTGGGGATGAGTGGGATAGGTGGAATAGGAAAAACAACTCTTGGTCATGGTTTTTATGCTATGCTAGCAAGGGAATTGATAGTTCTTGATAATGTTGATCAAGTTGGACTCCTAAAGATGTTTCCAAGGAGTAGAGATACTTTGTTACGTGAATGCCTAGGTGAAGGGGGCAGAATCATCATAATTTCTAGGGATAAGCATATATTGATGAGACATGGAGTAGATGATGTTTACCAAGTCCAAGCATTGGATCACGAACATGCTGTTCAGTTGGTTTGCAGAAATGCTTTCAAAAGTAATTATGTTATGACCGATTATAAAAAGTTGGCTTATGACATACTATCACATGCCCAAGGCCATCCCTTAGCAATGAAGTATTGGGCTCATCTTTTTATTGATTTTCGTGGATTTCATCCTAAATATGGCCTTCAAGTTCTAATTGATAGATCACTCATAACCATTAAATATGAATTGATTCATATGCGTGACTTGTTGAGAGATTTAGGCAGGTATATTGTTCGAGAAAAATCACCTAAGAAGCCAAGAAAATGGAGTAGATTATGGGATTTCAAAAAGATCTCCACAAAGGTATATGCTCTATCAAAAATGATTCACCTTAAGTTGCTCGTACTTGAAAAAATGAATTTTTCAGGAAGACTTGGTAATCTTTCCAATGAATTAGGATATCTTACTTGGAATGAATATCCTTTTGAGTGTTTGCCACCTAGTTTTGAGCTGGACAATCCTGTTAGGTTGCTTTTGCCTAATAGCAACATCAAACAACTATGGGAAGGCATGAAGCCTCTACAGTCTACACAATTTGAGACATTTGATTCTCTCATTCCAAAAATCCAATTGAGATGCCAGATATTGGGGAGGCCCTAA 1281 0.3786 MASKTTIHCCFRGEDTRNSFTGFLFQALSRKGTIDAFKDGKDLKKGESIAPELIQAIQGSRLFFIVVFSNNYAFSTIRKKLQYAEIEDLEKITNILGHKFSSLPNDDLVGMESCVKELAKLLRLGSVNDIQVVGMSGIGGIGKTTLGHGFYAMLARELIVLDNVDQVGLLKMFPRSRDTLLRECLGEGGRIIIISRDKHILMRHGVDDVYQVQALDHEHAVQLVCRNAFKSNYVMTDYKKLAYDILSHAQGHPLAMKYWAHLFIDFRGFHPKYGLQVLIDRSLITIKYELIHMRDLLRDLGRYIVREKSPKKPRKWSRLWDFKKISTKVYALSKMIHLKLLVLEKMNFSGRLGNLSNELGYLTWNEYPFECLPPSFELDNPVRLLLPNSNIKQLWEGMKPLQSTQFETFDSLIPKIQLRCQILGRP 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01539 426 SMART till_3 4 128 IPR000157 GO:0007165
Gma12g01539 426 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 331 407 - -
Gma12g01539 426 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 185 257 - -
Gma12g01539 426 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 268 325 - -
Gma12g01539 426 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 101 148 IPR044974 GO:0006952
Gma12g01539 426 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 75 IPR044974 GO:0006952
Gma12g01539 426 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 101 148 - -
Gma12g01539 426 ProSiteProfiles TIR domain profile. 3 122 IPR000157 GO:0007165
Gma12g01539 426 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 185 257 IPR044974 GO:0006952
Gma12g01539 426 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 3 75 - -
Gma12g01539 426 Gene3D - 90 157 IPR027417 -
Gma12g01539 426 Pfam TIR domain 9 85 IPR000157 GO:0007165
Gma12g01539 426 Pfam NB-ARC domain 156 260 IPR002182 GO:0043531
Gma12g01539 426 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 268 325 IPR044974 GO:0006952
Gma12g01539 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 269 IPR027417 -
Gma12g01539 426 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 77 IPR035897 -
Gma12g01539 426 Gene3D - 3 88 IPR035897 -
Gma12g01539 426 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 331 407 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01539 Gma-Chr12 34609388 34611658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01539 109 402 WRKY Transcription Factor Family AT5G45050 21.681 3.82e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01539 - - gmx:100305456 270.781