Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01509 ATGGATAGCTACTACCATCAACACCACAACCCTCACTTTGACAACAACAATGAACCACATTTACCTCCTGGCTTCAGATTCCACCCCACAGATGAAGAACTCATCACATACTACCTCCTCAAGAAGGTTCTAGATAGCTCCTTCACTGGCCGAGCCATAGTTGAAGTCGACCTCAACAAGTGCGAGCCATGGGAACTTCCTGAGAAAGCAAAGATGGGTGAGAAGGAATGGTACTTCTATAGCCTTCGTGACCGAAAGTACCCAACTGGGTTACGCACAAATAGAGCCACTGAAGCTGGTTATTGGAAAGCCACTGGAAAAGACAGAGAGATTTACAGCTCCAAAACTTGCTCACTCGTTGGCATGAAGAAAACCTTGGTTTTCTATAGAGGAAGGGCTCCAAAGGGTGAAAAGAGCAACTGGGTCATGCACGAGTATCGCTTAGAAGGCAAATTCGCTTACCACTATCTCTCTAGGAGCTCCAAGGAAGAGTGGGTGATCTCACGTGTGTTTCAGAAGAACACCACCGGCGGTGGCTCCACCGTGTCATCCGCCTCCGCCGCCACCACCGGTGGTAGTTCTAAGAAAACAAGAATGACCACATCAAACAATAGCAGCAACATGAGCCTCTGCCCCGAACCGGGTTCACCCTCTTCCATATACCTTCCGCCGCTTCTAGAATCTTCTCCTTACGCCGCGGCTGCGGCAACATTCAACGACCGCGAAAGATGCTCCTTCGACAGCGCCGCCAACAACAACCAAAGGGAGCACGTGTCCTGTTTCTCCACCATCTCCGGCGCCGCCTTCGACCACCTCGTTCCGTCGCCGGAGCCTCCGCTCGACCCTTCCGCTCGCTTTCATCGTAACAACAACAACAACGTCGGTGTCGGAATCTCCACCTTCCCGTGCCTCAGATCCTTGCACGACAACCTTAACCTTCCCTTCTTTTTCTCTCCAACGGGCCACATCAGCAGTGCTGAAGTGGCATCATTTGGTGCCGTTGGCAACTGGACGGCGGCACCGGAAGAGCACAGGATGGCTGACAGTGGCTCCGGCATGACGATTGTACCGTCCGAGTTGGATTGCATGTGGGACTATTGA 1101 0.5232 MDSYYHQHHNPHFDNNNEPHLPPGFRFHPTDEELITYYLLKKVLDSSFTGRAIVEVDLNKCEPWELPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKEEWVISRVFQKNTTGGGSTVSSASAATTGGSSKKTRMTTSNNSSNMSLCPEPGSPSSIYLPPLLESSPYAAAAATFNDRERCSFDSAANNNQREHVSCFSTISGAAFDHLVPSPEPPLDPSARFHRNNNNNVGVGISTFPCLRSLHDNLNLPFFFSPTGHISSAEVASFGAVGNWTAAPEEHRMADSGSGMTIVPSELDCMWDY 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01509 366 Gene3D NAC domain 30 177 IPR036093 GO:0003677|GO:0006355
Gma12g01509 366 ProSiteProfiles NAC domain profile. 21 173 IPR003441 GO:0003677|GO:0006355
Gma12g01509 366 MobiDBLite consensus disorder prediction 176 214 - -
Gma12g01509 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 13 348 - -
Gma12g01509 366 MobiDBLite consensus disorder prediction 1 15 - -
Gma12g01509 366 SUPERFAMILY NAC domain 16 173 IPR036093 GO:0003677|GO:0006355
Gma12g01509 366 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 348 - -
Gma12g01509 366 MobiDBLite consensus disorder prediction 1 23 - -
Gma12g01509 366 Pfam No apical meristem (NAM) protein 22 148 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01509 Gma-Chr12 32826502 32828862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01509 4 366 NAC Transcription Factor Family AT5G53950 49.874 8.06e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma12g01509 NAM 3.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01509 - - gmx:100778689 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01509 12 32826502 32828862 Gma06g02156 06 38720807 38722955 GST