Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01500 ATGTCACATTCCAGGAAACCCGTGTCGTCCGAGTTAGGGTTCACCGAGCGGTTCCGCGACTCACTGAGTTGCTCCGACGACAACACCAACAAGCCCGATTTCCGAGAACTCGATTTGGGTTCACCGGTTTCCACATTGCGGCCACGTCACTACCACAGTGCACCCACTACAACGAGTAGCACTAGTACGAGCACTAGCAGCGGGTCGACCGGGTCGGGTTCGGGTCGAAGCGGAAACAATAACGCGGTTTCCAAGAGATCCCATTCCGGCGAGTTGTCTGGGTCGAGCGAGACCAATAGTCCGACCCGTGTTTCCAAACCGGGTCACCGGAGATCCAATTCGGGTCAGAGCCAGAGATCTCCGTCGTCTTCCTCCTCCTCCGCCGCGGTGAATTCACCGCCTCTGAGCGTTCTCCCGGCCGGGAACATCTGCCCGTCCGGGAGGGTTCTCAAGGCGGCGACCGCAGCGGTGGCGCCCAGCCGGAGCTCCCGGTCGGATGTTCTGGGATCCGGCACGGGGAATTACGGCCACGGGAGCATAATGCGAGGTGGAAAAGGTGGTGGTGGTGGGGATGTGAGGATCGCCGGAGATTCAGCGAAGCGCGTGGATCCGGAGGAGGTGAAGAGGATGGGAAATGCGGAGTATAAGAGAGGGCACTTTGCTGAGGCGTTGTGTTTGTATGATCGGGCAATTGCGATGTCGCCGGGCAATGCCGCTTACCGGAGCAACCGTGCGGCGGCGTTGACCGGGTTGGGACGGCTGCCGGAGGCGGTGAGGGCGTGTGAGGAGGCTGTGGTGTTGGATCCTAATTATGGGAGGGCGCATCAGCGCTTGGCAATGCTGTTTCTCAGGTTAGGACAGGTTGAGGATTCTAGGAAGCGCCTTTGTTATCCTGGGCTGCAGCCAGATCCTGCTGAGTTGCAGAAGTTGCAAATTGTGGAAAAGCATATTAACAAATGTGGTGATGTGCGGAGGATACGAGATTGGAAAAGCGTACTGAGGGAGGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTCTCAAGCAACACCAGATGGATGATGCTGAATCATGTTTATCACAGATTCCCAAAAGCGAGCCACGACCTGGTTCCTTATCACAGGCAAGATTTTTTGGGATGTTTTCCGAGGCTTATTGCTTCTTCGTTAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATTGACCCCCGAAATGTTGAAGTTGCTGTTTTGCTCAACAATGTGAGGATGGTTGCTAGAGCTCGACTGCGTGGTAATGATCTTTTTAAGTCAGAAAGGTTCACTGAGGCCTGCTCGGCATACGGGGAAGGTTTGAGGCTCGACCCTTCAAACTCTGTCCTCTATTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAAGACTGCAATCAAGCTTTATGCATCCTACCAAATTATACAAAAGCCATTCTTCGAAGGGCTGCCTCAAATAGCAAGCTAGAACGGTGGGAAGAAGCAGTAACAGATTATGAACTTTTGCGGAGAGAACTACCAGACGACAATGAAGTTGCTGAAAATCTGTTTCATGCACAAGTAGCATTAAAGAAATCTCGTGGGGAAGAAGTACATAATTTAAAATTTGGTGGTGAAGTGGAGGACATATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCTTTTTGAAACTGCATCAAACATGCAATGTAAGCAGATATCGCCATTCATGAATACACTATGTAGTCGTCATCCATCTATTAACTTCCTTAAGGTGGATATTCAAACAAGCCCCGCAGTCGCCGCTGCTGAGAATGTTAGGGTTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGAGTGAAGGAAATTATATGTCCTAGTCATGATATGTTGGAACACTCCATTAGGCATTACAGCTTGTAG 2031 0.5066 MSHSRKPVSSELGFTERFRDSLSCSDDNTNKPDFRELDLGSPVSTLRPRHYHSAPTTTSSTSTSTSSGSTGSGSGRSGNNNAVSKRSHSGELSGSSETNSPTRVSKPGHRRSNSGQSQRSPSSSSSSAAVNSPPLSVLPAGNICPSGRVLKAATAAVAPSRSSRSDVLGSGTGNYGHGSIMRGGKGGGGGDVRIAGDSAKRVDPEEVKRMGNAEYKRGHFAEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPEAVRACEEAVVLDPNYGRAHQRLAMLFLRLGQVEDSRKRLCYPGLQPDPAELQKLQIVEKHINKCGDVRRIRDWKSVLREVDAAVAAGADSCVQLFMCRAEALLKQHQMDDAESCLSQIPKSEPRPGSLSQARFFGMFSEAYCFFVRAQIEMAFGRFENAVTAAEKASQIDPRNVEVAVLLNNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALCILPNYTKAILRRAASNSKLERWEEAVTDYELLRRELPDDNEVAENLFHAQVALKKSRGEEVHNLKFGGEVEDISGLEQFRAAISLPGVSVVLFETASNMQCKQISPFMNTLCSRHPSINFLKVDIQTSPAVAAAENVRVVPTFKIYKNGSRVKEIICPSHDMLEHSIRHYSL 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01500 676 ProSiteProfiles TPR repeat profile. 204 237 IPR019734 GO:0005515
Gma12g01500 676 MobiDBLite consensus disorder prediction 155 200 - -
Gma12g01500 676 Pfam Thioredoxin 584 668 IPR013766 -
Gma12g01500 676 MobiDBLite consensus disorder prediction 20 34 - -
Gma12g01500 676 Pfam Tetratricopeptide repeat 400 429 IPR019734 GO:0005515
Gma12g01500 676 SUPERFAMILY Thioredoxin-like 479 674 IPR036249 -
Gma12g01500 676 Pfam Tetratricopeptide repeat 478 509 IPR001440 GO:0005515
Gma12g01500 676 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 13 674 IPR044534 -
Gma12g01500 676 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 13 674 - -
Gma12g01500 676 CDD TRX_family 581 662 - -
Gma12g01500 676 Pfam Tetratricopeptide repeat 210 270 - -
Gma12g01500 676 Gene3D Glutaredoxin 569 675 - -
Gma12g01500 676 SMART tpr_5 204 237 IPR019734 GO:0005515
Gma12g01500 676 SMART tpr_5 396 429 IPR019734 GO:0005515
Gma12g01500 676 SMART tpr_5 442 475 IPR019734 GO:0005515
Gma12g01500 676 SMART tpr_5 510 543 IPR019734 GO:0005515
Gma12g01500 676 SMART tpr_5 476 509 IPR019734 GO:0005515
Gma12g01500 676 SMART tpr_5 348 381 IPR019734 GO:0005515
Gma12g01500 676 SMART tpr_5 238 271 IPR019734 GO:0005515
Gma12g01500 676 MobiDBLite consensus disorder prediction 158 172 - -
Gma12g01500 676 MobiDBLite consensus disorder prediction 1 135 - -
Gma12g01500 676 MobiDBLite consensus disorder prediction 50 133 - -
Gma12g01500 676 Gene3D Tetratricopeptide repeat domain 202 562 IPR011990 GO:0005515
Gma12g01500 676 SUPERFAMILY TPR-like 204 432 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01500 Gma-Chr12 31592540 31595665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01500 441 586 U-box Gene Family AT3G07370 28.415 1.58e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01500 - - gmx:100805790 1248.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01500 12 31592540 31595665 Gma12g01500 12 31592540 31595665 ECH
Gma13g02402 13 38764279 38767304 Gma12g01500 12 31592540 31595665 PCT
Gma12g01500 12 31592540 31595665 Gma13g02577 13 40628135 40630972 PCT
Gma12g01500 12 31592540 31595665 Gma12g01981 12 40399070 40402007 PCT