Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01493 ATGGCCACCGGAGATTTGGAGGCCTTCTTCCCTGCTGCAACGCGTGAGTATGCTCCTATGGTAGATGAAATCTGGAGAGATCCTGCTGTTCAGGAAACATACAAGACAAAAAAGGAATTACATAATCTTCCCAATGTTGCTAAATATTTCTTGGATCGGCGCAAGGTCTTCTCCTGCCCTTTGCCAGCCTCTATCATTCCTGAGCTTCATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTTGGAGCAAGAGAGATACTTCTTTAGCACCAAAGTGGCCAAATATCCCAACGGAAATCGCTCCAACAGAGCCACAAATTCGGGTTATTGGAAGGCAACTGGTTTGGACAAACAAATTGTTACTTCAAAAGGGAACAACCAAGTTTTCGAAATGAATAAGACACTTGTTTTCTGCAGAGGCAAGCCTCCTTATGGATCCAGAACTGATTGGATCATGCACGAGTATCGCCTCATCCTTAACGGCTCTCAGTCTAAGAGCGAGAGGAGTTGCCGAGAGCCCCATGATGTCGACGACGATCTCGACGCTGATGACAGAAAGAGCGAGAGGGAGACCGTGACTGCGAACGTTCCTCTGGTCGTCACAGGAGCGAGAGAGAGAGACGAAGAGAGGAAAGACATGGATAAGGATAGAAAGAGGAGGGATAGAGATAAGGATAGGATAGACCGTGATAGGGACAGGGAGCACGAGAGAAGAGAGAAGGATAGGGAGCGAGAGAGGGAAAGAGCGGAGAGGGAGAGATCCACAAGGAGCAGGAGTCGCTCCGAGAGGGACAGAGACAGGGAGCGAGATTTTGATATGCGCGATGCCCGGAGATTTAGGGATAAAAAAGAGGTTGCAGAACCTGAGGCAGACCCAGCAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCGCTAAAAGCAACAGAGACAGATGTGTATGAGTTCTTTTCAAAAGCTGGCAAGAACCTTGTTCAATCTAATGCTTCTAGTGGAGCAGCCGGTGTAACTGGCCCCTATGGAGCTGTGGACCGAAAATTATATGTGGGGAATCTTCACTTCAACATGACTGAGAGTTAG 1086 0.4816 MATGDLEAFFPAATREYAPMVDEIWRDPAVQETYKTKKELHNLPNVAKYFLDRRKVFSCPLPASIIPELHVCKSDPWDLPGDLEQERYFFSTKVAKYPNGNRSNRATNSGYWKATGLDKQIVTSKGNNQVFEMNKTLVFCRGKPPYGSRTDWIMHEYRLILNGSQSKSERSCREPHDVDDDLDADDRKSERETVTANVPLVVTGARERDEERKDMDKDRKRRDRDKDRIDRDRDREHERREKDRERERERAERERSTRSRSRSERDRDRERDFDMRDARRFRDKKEVAEPEADPARDQRTVFAYQMPLKATETDVYEFFSKAGKNLVQSNASSGAAGVTGPYGAVDRKLYVGNLHFNMTES 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01493 361 Coils Coil 234 254 - -
Gma12g01493 361 MobiDBLite consensus disorder prediction 164 271 - -
Gma12g01493 361 MobiDBLite consensus disorder prediction 169 193 - -
Gma12g01493 361 MobiDBLite consensus disorder prediction 204 271 - -
Gma12g01493 361 Gene3D NAC domain 46 193 IPR036093 GO:0003677|GO:0006355
Gma12g01493 361 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 206 324 - -
Gma12g01493 361 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 322 361 - -
Gma12g01493 361 SUPERFAMILY NAC domain 50 165 IPR036093 GO:0003677|GO:0006355
Gma12g01493 361 Pfam No apical meristem (NAM) protein 49 159 IPR003441 GO:0003677|GO:0006355
Gma12g01493 361 SUPERFAMILY RNA-binding domain, RBD 232 324 IPR035979 GO:0003676
Gma12g01493 361 SUPERFAMILY Transducin (alpha subunit), insertion domain 12 54 IPR011025 GO:0007165
Gma12g01493 361 ProSiteProfiles NAC domain profile. 33 177 IPR003441 GO:0003677|GO:0006355
Gma12g01493 361 PANTHER CC1-LIKE SPLICING FACTOR 206 324 - -
Gma12g01493 361 PANTHER CC1-LIKE SPLICING FACTOR 322 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01493 Gma-Chr12 30824392 30830656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01493 46 159 NAC Transcription Factor Family AT5G13180 73.684 1.67e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma12g01493 NAM 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01493 - - gmx:100793870 246.128