Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01492 ATGATTCTATTGCTGATAAGCTTCTCCTTGGATGCACCACAGCGGAGCAGAGTAAAAGACTTGTCGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGAGAACAAGTCACTGATAATGCTATCTTAGATCAGATTTCTAAGACTGTACAAGTTGATATACCTCAATCCTTGTTTGAGGAACAAGGAAGGCAGCTTTATGGAGCCAACCTATTAGAAATACAGGTTCCTGAGGTTTTTAATCGTGTGATGCAACCAAGTACAACGCAGTTCCCCAGTATTTCAGAAGCATCAAGCAAAGATGAATTCCTGGAAGTGGCTATAGTAACGGCTGCTCTCTTGGAGCGTTTTGATGGAAACAACTATCTCCTGCTTCGTAGCTGCTTTCAGGATATGTTGAAGAAGGATCCAACATGTAGTGATGCCTTAGCAAAACTTATCAAGATACACCAAAATGCAATTCAGTTAGAGTCCATTGATTTATCAAACCATATAGGGCGTTGCTTCAAGGGAAAAAATGACACAAAACAAAGAAAGAGCTTATTGGGTGCTACGGAACTGAAGATATTTGAGCTTAACTCCAAGAGGTTTTGCCAACCCCAACCTGCAGCAAATAATATTGCATGGGTTGGTTTACTAAGTTGCTTAAGGGATCCAATCGTAAATCCTCAGGAGGAAGATATCATGGGAAATATGAAGATGACAGAATATCGGACAATCTTGATTGTTCAGCGGAGGAGGATTACACCTCCTGATGATTTGACGGATATTGAGAAAGAAGAAATTGGTCGGGCAATAGCACTCTCTCTTTCAGAGGCAGATAAGAAAGGGAAAAAAGTTATTGAGGACGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTAGCGACGAGGAAGCTGAATCTGTTGGTGAAGTTCAGCAAGATGAAGATGACCATCATGCTACAATTCAACAGGATGAAGACAAACATCTTGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTAGTTCTCCTCCTCGATCTGAGACTGATTCTTTATTTCAACCTTTAGCACACTTATTTCCACCTGTATACAGAATCTGTGCTGGCTGTAATGCTGAGATTAGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCGGAATGCTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGATTCCACCAAATTCAGCTGGTCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTTGTAGCTGTCAAAGATTGGAGTCAGTGGATACCAAATATCTGTTGCTTGACGATGGTCGAAAGCTGTGCCTGGAGTGTCTTGACTTAGCTATCATGGATACTCATGAATGCCAACCTCTCTATGTCGAAATACAAGAGTTTTATGAGGGTTTACATATGAAGATGGAGCAGCAAGTTCTGATGCTTTTGGTTGAGAGACAAGCACTGAACGAGGCTATGGAGGGAGAGAAGAATGGTCATCATCACTTACCTGAAACCAGAGGACTTTGCTTGTCCGAAGAGCAAAATGTTCCCACTGTAGGGATCTCTTGTGAATTTCAGTCTTATTGA 1659 0.4165 MILLLISFSLDAPQRSRVKDLSLQKCQEVEQTAREQVTDNAILDQISKTVQVDIPQSLFEEQGRQLYGANLLEIQVPEVFNRVMQPSTTQFPSISEASSKDEFLEVAIVTAALLERFDGNNYLLLRSCFQDMLKKDPTCSDALAKLIKIHQNAIQLESIDLSNHIGRCFKGKNDTKQRKSLLGATELKIFELNSKRFCQPQPAANNIAWVGLLSCLRDPIVNPQEEDIMGNMKMTEYRTILIVQRRRITPPDDLTDIEKEEIGRAIALSLSEADKKGKKVIEDDSESEDDELCPLSDEEAESVGEVQQDEDDHHATIQQDEDKHLDEVQLEEDEQLARAIQESLSISSPPRSETDSLFQPLAHLFPPVYRICAGCNAEISHGRFLSCMGGYWHPECFCCHACKLPITDYEIPPNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRLESVDTKYLLLDDGRKLCLECLDLAIMDTHECQPLYVEIQEFYEGLHMKMEQQVLMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQNVPTVGISCEFQSY 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01492 552 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 331 350 IPR003903 -
Gma12g01492 552 Pfam LIM domain 372 408 IPR001781 -
Gma12g01492 552 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 368 397 - -
Gma12g01492 552 Gene3D Cysteine Rich Protein 368 439 - -
Gma12g01492 552 PANTHER PROTEIN DA1-RELATED 2 411 543 IPR045218 -
Gma12g01492 552 ProSiteProfiles LIM domain profile. 370 453 IPR001781 -
Gma12g01492 552 MobiDBLite consensus disorder prediction 284 306 - -
Gma12g01492 552 SMART uim 257 276 IPR003903 -
Gma12g01492 552 SMART uim 331 350 IPR003903 -
Gma12g01492 552 CDD LIM_DA1 372 414 - -
Gma12g01492 552 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 251 410 - -
Gma12g01492 552 PANTHER PROTEIN DA1-RELATED 2 251 410 IPR045218 -
Gma12g01492 552 ProSitePatterns LIM zinc-binding domain signature. 372 406 IPR001781 -
Gma12g01492 552 SMART lim_4 371 435 IPR001781 -
Gma12g01492 552 Pfam Protein DA1 493 543 IPR022087 -
Gma12g01492 552 MobiDBLite consensus disorder prediction 276 314 - -
Gma12g01492 552 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 411 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01492 Gma-Chr12 30815142 30823387 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma12g01492 DA1-like 3.4e-18 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01492 - - gmx:100792521 575.089