Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01479 ATGGATCAAATGAGTCAACAAAGGCATGGCTATTTTCATTCAGAAAGTATCCATTTCAGAGGCAGCAACATCTCTCAACCTAATGTATGCACACTCGTGACAGCCTCAGGGAACGGAACTAATCTAGATTCCCATTATTTACTAGATGCTTATGACAATGGTATGGTGTATGGAATGACACAATACAATGGAGTTCAACATCAACATAATCTTGATATGGGTGTTCCAGCTGCGGCCAACTTATATTATTCTAGCATGAATCCTTCATCTGGTGCGGCTGTATCTCTAAATGCTGAAGTTATGAGAGGAAATTATCAATATTTCAATGCCTCGGCTAGTTCTTCAGTTGCTCCCCCTAATGCAAGACACACTGAAAATGGCATCCCCTCGCTACCACATTGCACTTCATGGAGCAGATCAGGCGAGTCTATGATGGTGCGTGACCCTAACCGTATAACTCGAGTAAATTATTTAAGTCAACACTTTCAACCAGCAGCTCCTCCTCCCTGGCTGGACCAGCAGTTGAATAGCAATAATAATGATGGTCATGCTTTGCCTTGGCATCAGTCTCTTCTAATGCCATATGTACAAGCTCCCAGTGCTAATGGAAGTTCATTAGAGAATGCAAGAATGGGCCCCCAGAGATATCATGATACAGCTGGCAGCAGAAGTGGCCACAGATTTCCCCATCCTCCCCTTGTCAACCCACACTACCATAGCTTTCATCATCAAACACAGCCTGTCCAAGAGATGAGAGGTCACTCCATCAACTTTCACCCTCCTCCTCCAGTAACTGCACCTTCATATAGAGTTCCAACAAATCCATCACGCAGTTCTTCAATCTTCATACAAGATTCTATTGAGATGGGTGCTAGGCATGTTGGTGCTGCACCATTTGCAGGTTCACATATATACCGACCCCATAGAGGCAGCACACATGAGACTACTCTTAGACATCGAAATCTTCCTCCCGTGACTTTTCTCCAAGTTGATGATGTTACTTTACTGGTTGACCATCATAATGATATGCGCTTGGACATTGAGGATATGTCTTATGAGGCAATTGGAAAACAGGAGCTTCTTGCATTAGGGGAGCGGATTGGCAAAGTAAACACAGGTTTGTCAGAGGAAATGATTACAAGTCAAATGAAGACAAAAACTTATTTATTACTACCTACTAATGCTATTAACTTGGAGGAGGCAGCTTCTGAGGAACAGGAAAATGATTCTTGCATAATATGCCAGGATGAATATAAAAGCCAAGAAAAGATTGGAATTCTTCAATGTGGGCACGAATATCACGCAGATTGTTTAAAGAAATGGTTACTTGTGAAAAATGTCTGCCCCATATGCAAATCAGAAGCATTGACTCCTGGAGAGAAGTGTGTATAA 1392 0.4231 MDQMSQQRHGYFHSESIHFRGSNISQPNVCTLVTASGNGTNLDSHYLLDAYDNGMVYGMTQYNGVQHQHNLDMGVPAAANLYYSSMNPSSGAAVSLNAEVMRGNYQYFNASASSSVAPPNARHTENGIPSLPHCTSWSRSGESMMVRDPNRITRVNYLSQHFQPAAPPPWLDQQLNSNNNDGHALPWHQSLLMPYVQAPSANGSSLENARMGPQRYHDTAGSRSGHRFPHPPLVNPHYHSFHHQTQPVQEMRGHSINFHPPPPVTAPSYRVPTNPSRSSSIFIQDSIEMGARHVGAAPFAGSHIYRPHRGSTHETTLRHRNLPPVTFLQVDDVTLLVDHHNDMRLDIEDMSYEAIGKQELLALGERIGKVNTGLSEEMITSQMKTKTYLLLPTNAINLEEAASEEQENDSCIICQDEYKSQEKIGILQCGHEYHADCLKKWLLVKNVCPICKSEALTPGEKCV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01479 463 SMART ring_2 411 451 IPR001841 -
Gma12g01479 463 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 86 460 IPR045191 GO:0061630
Gma12g01479 463 ProSiteProfiles Zinc finger RING-type profile. 411 452 IPR001841 -
Gma12g01479 463 Pfam Ring finger domain 409 452 IPR001841 -
Gma12g01479 463 SUPERFAMILY RING/U-box 404 456 - -
Gma12g01479 463 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 86 460 - -
Gma12g01479 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 456 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01479 Gma-Chr12 29120965 29126824 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01479 333 456 C3H Transcription Factor Family AT2G15530 48.387 1.16e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01479 K19041 - gmx:100808448 945.651