Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01477 ATGGATCGAATGAGTCAACAAGGGCATTATTTTCACTCTGAAAGTATGCATTTCACAAGCACCAACATCTGTCTGCCTAATATATGCCCAGTGGTTACATCTTCAGGCAACGGAACTATTCTAGATTGCCATTATATACTAGATGCTCATGACAGCTATTTAGGTCGGCACTTTCAACCAGCTGCTCCTCTCTGGCCGGACCAACAGTTGAATAGCTATAATAATGATGGTCATGCTTTGGCTTGGCATCTGTCTCTTCCAATGCCATATGTACAAGCTCTCAGTGCTAATGGAAGCTCATCAGAGAATGCAAGAATTGGTCCACAGAGATATCATGATACAACTGGCAGCAGAAGTGGCCACAGATTTCCCCATCCTCCTCCACAGTACCATAGCTTTCATCAACATGCACAAGAGATCAGAGGTCACTCCTTCTACTTTCATCCTCCTGTAATTGCACCTTTGTATAGAGTTCCAACGAATCCTTCACGCAGTTCTTCAATCCTCATACATGATGCTATTGAGATAGGTGCTAGGCATCCTGGCCATGTACCATTTGTAGGTGCACGTATACACCAGTCTCATAGAGGCAACATGCACGAGGCAACTCTTAGACATCAAAATCATCTTCCTGCGACCTTTTTCCTAGATGATGATGTAGCTTTACTGGTTGACCATCATACTGATATGCGCTTGGACACTGAGGATATGTCTTATGAGGAGCTTCTTGCATTAGGTGAGCAGATTGGCAACCCAAAATCAGGTTTATCAGAAAATATAATTACAAGTCAAATGAAGACCAAAACTTATTTACGTTCTACTAATGCGACTAACTTGGAGGAGGCAGCTTCTGAGGAGCAGGAAACTGATCTTTGCATAATATGCCAGGATGAATATAAGAACCAAGAGAAGATTGGAATTCTTCGATGCGGGCACGAATATCACACAGATTGTTTAAAGAAATGGTTACTTGAGAAAAATGTCTGTCCCATGTGCAAATCCGTAGCATTGACTCCGGGAGAGAAGTGTATATAA 1035 0.4232 MDRMSQQGHYFHSESMHFTSTNICLPNICPVVTSSGNGTILDCHYILDAHDSYLGRHFQPAAPLWPDQQLNSYNNDGHALAWHLSLPMPYVQALSANGSSSENARIGPQRYHDTTGSRSGHRFPHPPPQYHSFHQHAQEIRGHSFYFHPPVIAPLYRVPTNPSRSSSILIHDAIEIGARHPGHVPFVGARIHQSHRGNMHEATLRHQNHLPATFFLDDDVALLVDHHTDMRLDTEDMSYEELLALGEQIGNPKSGLSENIITSQMKTKTYLRSTNATNLEEAASEEQETDLCIICQDEYKNQEKIGILRCGHEYHTDCLKKWLLEKNVCPMCKSVALTPGEKCI 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01477 344 MobiDBLite consensus disorder prediction 99 129 - -
Gma12g01477 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 337 IPR013083 -
Gma12g01477 344 MobiDBLite consensus disorder prediction 99 114 - -
Gma12g01477 344 ProSiteProfiles Zinc finger RING-type profile. 292 333 IPR001841 -
Gma12g01477 344 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 49 341 - -
Gma12g01477 344 SUPERFAMILY RING/U-box 285 337 - -
Gma12g01477 344 SMART ring_2 292 332 IPR001841 -
Gma12g01477 344 Pfam Ring finger domain 291 333 IPR001841 -
Gma12g01477 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 49 341 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01477 Gma-Chr12 28430347 28433705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01477 191 337 C3H Transcription Factor Family AT2G15530 39.456 1.56e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01477 K19041 - gmx:100808611 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01477 12 28430347 28433705 Gma12g01477 12 28430347 28433705 ECH