Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01471 ATGGGTCGTCCACCGAGTAATGGGGGCCCAGCCTTTCGCTTCACTCAGCCTGAGGTAGCAGAGATGGAAGCTATTCTTCAAGAACATAACAATGCAATGCCATCACGTGATGTTCTTACAACTCTTGCAGAGAAGTTCAGTGAATCACAAGATCGTAAAGGCAAGATTGCAGTGCAGATGAAGCAAGTTTGGAATTGGTTTCAAAATAAGCGGTATGCGATAAGAGCAAAATCAAGTAAGACTCCTGGGAAGTTAAATATTACACCTATGCCTCGGGATGATTACAATTCAACCCCAATAAGGAGTATGCCTCAACAACCAACAGCTGCTCCAATTCCCGCTGCTTCTGCTACAGTTCCAACAGCAGTAAAAGCAACTCCAGAAAATTCAGTTTTGGAATTTGAAGCTAAATCTGGAAGGGATGGAGCATGGTATGATGTGGCTACCTTTCTATCACACAGATATTTAGAAACAAGTGATCCGGAAGTGCTGGTACGATTTGCTGGTTTTGGACCTGAGGAAGATGAGTGGATTAACATTCGAAAGCATGTCAGGCCACGCTCTTTGCCTTGTGAATCATCAGAATGCGTTGTAGTCATCCCTGGCGATCTCATACTTTGTTTTCAGGAAGGTAAGGAGCAAGCCCTTTACTTTGATGCCCATGTCCTTGATGCTCAAAGACGAAGGCATGATGTACGAGGCTGCCGTTGTAGATTTCTGGTTCGTTATGATCATGATCAGTCAGAGGAAATCGTGCCGCTTAGGAAGATTTGTCGCCGGCCCGAAACCGATTATCGATTACAGCAACTTCATGCTGTGAATGAGGCAGCACCTATGGATCAGCAGAAAACTGGGATGGATCcagcagcaaatgttaatgccgtaagggctactactactgaaacagcagcaaatgttaatgccgtaagggccactactactgaaacagTGCCGAAGCAGCTGATTGCAGCAAACATTCATATGGAGACAGTTCCAGTTGTGCAAACAAATGTTCCTCAACCTCCACAAAGTATGGATATGGGTGTGGATCAAAAGAAAGCTGAAACAAATACTGATGTTCAAGCAGGAAATTCCATCATCACCCCAGGCAGTGTCCTTACTAACATCATTACTACAAGCGGTGTTCCTAAAGTCTCTAGTCAGACTCAGAACATGGTTGAATGA 1185 0.4118 MGRPPSNGGPAFRFTQPEVAEMEAILQEHNNAMPSRDVLTTLAEKFSESQDRKGKIAVQMKQVWNWFQNKRYAIRAKSSKTPGKLNITPMPRDDYNSTPIRSMPQQPTAAPIPAASATVPTAVKATPENSVLEFEAKSGRDGAWYDVATFLSHRYLETSDPEVLVRFAGFGPEEDEWINIRKHVRPRSLPCESSECVVVIPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKICRRPETDYRLQQLHAVNEAAPMDQQKTGMDPAANVNAVRATTTETAANVNAVRATTTETVPKQLIAANIHMETVPVVQTNVPQPPQSMDMGVDQKKAETNTDVQAGNSIITPGSVLTNIITTSGVPKVSSQTQNMVE 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01471 394 CDD homeodomain 13 75 IPR001356 GO:0003677
Gma12g01471 394 SUPERFAMILY Homeodomain-like 4 76 IPR009057 -
Gma12g01471 394 Gene3D - 191 263 - -
Gma12g01471 394 Gene3D - 10 84 - -
Gma12g01471 394 SMART HOX_1 7 81 IPR001356 GO:0003677
Gma12g01471 394 Gene3D - 129 190 - -
Gma12g01471 394 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 364 - -
Gma12g01471 394 Pfam SAWADEE domain 132 258 IPR032001 GO:0003682
Gma12g01471 394 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Gma12g01471 394 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 364 IPR039276 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01471 Gma-Chr12 27871299 27879805 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gma12g01471 SAWADEE 8.7e-40 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01471 - - gmx:100785646 678.322