Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01447 ATGGGTGGTGTCTGTTGCAAGCCCTCTGCCATTGAGGATAGCAAGGAGAGTCCAAGGGAGCGTATGTCGACCAAGGCGGCTTCATTGGACTCTCGTGTGTCGAGGGGTGCTTCCTTGAGGCGGGAGGATGCATATAGGGGGAAGGATAGGTATGATGGTAATGATGTGAGGACTGCTTTGATTGATAAGCAAGGGAACGGTTCTGTGCGGTTGCAAGACGAAAATATTGAGAGGAAGAGGGAGAGAATGGAGTGTGTTGTTGCTGCTCAACAACATCCAGGGGCTGGTAGTGTTCCCAAGGCCATGGAAGGGGAGCAGGTTGCAGCTGGATGGCCATCCTGGCTGGCAGCAGTGGCTGGAGAGGCTATTAAGGGATGGTTGCCTCGCCGTGCTGATTCCTTCGAGAAGCTGGATAAAATTGGACAGGGAACTTATAGTAATGTTTATAGGGCTCGTGATCTTGAGCAAAATAAAATTGTTGCTTTGAAAAAAGTCAGGTTTGATAATCTTGAGCCAGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTACGTAGGCTTGATCATCCAAATGTCATAAAACTGGAAGGCCTTGTTACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTCGAATACATGGAGCATGATTTGGCTGGGCTTGCATCACATCCTAAACTGAAGTTTACGGAAGCACAGGTAAAATGTTACATGCAGCAACTTCTACAAGGACTTGACCACTGCCACAACTGTGGTGTGCTGCACCGTGACATTAAGGGTTCCAATCTTTTGATTGATAACAATGGCATCTTGAAGATTGCAGACTTTGGTTTGGCAAGTGTTTTTGATCCAAATCAAACTCAGCCTTTGACAAGCCGAGTTGTCACTCTTTGGTACCGTCCACCAGAGCTTTTACTTGGTGCCACATACTATGGCACTGCTGTAGATTTATGGAGTACAGGCTGTATACTTGCTGAGTTGTATGCTGGCAAACCTATAATGCCTGGAAGAACTGAGGTGGAGCAGTTGCATAAAATTTTTAAACTTTGTGGTTCACCTTCTGAGGATTATTGGAGAAAATCAAAGTTGCCACATGCAACCATATTTAAGCCCCGACAACCCTATTGGCGTTGTGTTGCCGACACATTCAAGGATTTCCCTGCACCTGCTTTAGCACTCATGGAGACTCTTTTGTCCATTGATCCTGCTGATCGTGGAACTGCAGCATCTGCTTTGAAGAGTGATTTCTTCACAACAAAGCCTCTACCTTGTGATCCTTCAAGTTTGCCAAAGTATCCTCCTAGCAAAGAATTTGATGCCAAACTACGGGACGAACAAGCAAGAAGCAGGCAGGGGGCAACAGGAAGCAGGGGCCAGAGACATGACCTTGAAAGAAGAGGGGCAAAAGAATCTCGAGCTGTTCCTGCACCTGATGCCAATGCTGAACTGCCACTGTCAATGCAGAAGAGACAAAGTCAGGCCCAATCAAAAAGCAGAAGTGAGAAGTTTAATCCTCATCCTGAAGAAGCTTCTGGATTTCCCATTGATCCCCCCAGATCGTCACAAGCTGTAGAAGTAGGTATAGAAACTCAAGTACCACAACATAAAAGAGCCTCCCATTCGGGTCCGCTGGCTCACCGAACTGCATGGGCTAAATCTGGGAAGAACCAGGATGATGCTCCAAAGATTTCAGTTGGGGGCGACCTATCAACAATCTCAGGCTTAGTTGCTGCAAGGAGTATGTTGTCAGATGATCGCAGAGAAAGATCTGGATCGTCACAAACGGAGGCTTCAAAATTAACGAACAGATTCCCAGGATCATTCAAGGACTTCTCTGAATCGTCAATAAAACAAGATCAAAGGCATCATGTACAGGGCCAAGTAGGCACTTCCCAAAAGGAAGAAGGGAGAAGCAGCAACAAAGACCTAGTTCTTGTTGGTTATGGATCAGAGGGTCATAAAATTCATTACTCTGGTCCATTAACATCAAGCAACATGGATCAGGTGTTGAAAGACCATGACCGCCAAATTCAAGAGGCTGTTAGACGGGCACGTTTGGATAAAGCAAAAATTAGGAGGCTCCAAGCTGAAGGGAACCAGGTAACCAATTCATTATTTGTTTCCAAACGTTGA 2136 0.4593 MGGVCCKPSAIEDSKESPRERMSTKAASLDSRVSRGASLRREDAYRGKDRYDGNDVRTALIDKQGNGSVRLQDENIERKRERMECVVAAQQHPGAGSVPKAMEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQNKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPKLKFTEAQVKCYMQQLLQGLDHCHNCGVLHRDIKGSNLLIDNNGILKIADFGLASVFDPNQTQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPRQPYWRCVADTFKDFPAPALALMETLLSIDPADRGTAASALKSDFFTTKPLPCDPSSLPKYPPSKEFDAKLRDEQARSRQGATGSRGQRHDLERRGAKESRAVPAPDANAELPLSMQKRQSQAQSKSRSEKFNPHPEEASGFPIDPPRSSQAVEVGIETQVPQHKRASHSGPLAHRTAWAKSGKNQDDAPKISVGGDLSTISGLVAARSMLSDDRRERSGSSQTEASKLTNRFPGSFKDFSESSIKQDQRHHVQGQVGTSQKEEGRSSNKDLVLVGYGSEGHKIHYSGPLTSSNMDQVLKDHDRQIQEAVRRARLDKAKIRRLQAEGNQVTNSLFVSKR 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01447 711 Gene3D Transferase(Phosphotransferase) domain 1 217 457 - -
Gma12g01447 711 SMART serkin_6 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01447 711 MobiDBLite consensus disorder prediction 443 524 - -
Gma12g01447 711 ProSiteProfiles Protein kinase domain profile. 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01447 711 Pfam Protein kinase domain 134 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01447 711 PANTHER CYCLIN-DEPENDENT KINASE 1 693 - -
Gma12g01447 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Gma12g01447 711 CDD STKc_CDK9_like 134 418 - -
Gma12g01447 711 ProSitePatterns Protein kinases ATP-binding region signature. 140 163 IPR017441 GO:0005524
Gma12g01447 711 MobiDBLite consensus disorder prediction 486 501 - -
Gma12g01447 711 Coils Coil 678 698 - -
Gma12g01447 711 PANTHER CELL DIVISION PROTEIN KINASE 1 693 - -
Gma12g01447 711 MobiDBLite consensus disorder prediction 1 48 - -
Gma12g01447 711 MobiDBLite consensus disorder prediction 582 641 - -
Gma12g01447 711 MobiDBLite consensus disorder prediction 595 614 - -
Gma12g01447 711 SUPERFAMILY Protein kinase-like (PK-like) 128 426 IPR011009 -
Gma12g01447 711 MobiDBLite consensus disorder prediction 12 26 - -
Gma12g01447 711 MobiDBLite consensus disorder prediction 443 473 - -
Gma12g01447 711 Gene3D Phosphorylase Kinase; domain 1 121 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01447 Gma-Chr12 25735738 25742111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01447 126 476 Core Cell Cycle Gene Families AT5G10270 51.771 2.67e-118 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gma12g01447 Pkinase 1.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01447 - - gmx:100781183 1415.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01447 12 25735738 25742111 Gma12g01447 12 25735738 25742111 ECH