Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01420 ATGGGTTTGGGAGTGTTTGGTTCTATTCTAATTCTGACGCTATTCTTCAAGCACTTGGCATCTCAACAACCAAACACTGATGATTTCTTTGTGTCTGAGTTCTTGAAGAAAATGGGTTTAGCAACTCCCCAGGTCTACAACTTTTCTGCTTCTGTTTGTTATGGGGTTTCATGTGATGCCAAGAGAGAACATGTTGTTGGCTTGCTCAAGAGCCTTAACCTCTCCTCCAATCAAATTTCTGGTTCATTGACTAACAACATTGGAAACTTTGGCTTGCTACATGTGTTTGACTTGTCCAGCAACAATTTCTCTGGGCAAATTCCTGAAGCTATTAGTTCCCTGATGAGTCTGAAAGTCCTCAAACTTAACCACAACAGGTTTGAGCAAAGACTACCTTCTGGGATTCTCCGGTGCCACTCTCTAGTTTCCATTGACCTTTCTTCAAATCAGCTAAGTGGGGCAATTCCAGATGGTTTTGGTGATGCTTTTCCTAACCTCATTACCTTGAACCTTGCCGGGAATAGTATTCATGGCAGTGATTCGGATATTTCTGGGTTGAAGTCCATTGTGAGTCTCAACATATCAGGCAATTCCTTTCATGGTTCTGTGATGAGTTTGTTTCATGGAAGGCTTGAGGTCATGGACCTTAGCAGAAACCAATTTGAAGGTCACATTTCTCAGATTGAAATTATCTTAGGATTGGAATATCTGAACTTGTCCAAAACTAGTCTGATTGGTTACATTCCTGCTGAAATCTCACAACTTAGTAATTTGAGTGCACTTGATGTTTCTATAAATCATCTTACTGGGAAAATCCCTTTACTAAGTAATAAAAACCTCCAAGTTCTTGACCTTTCAAACAACAATTTGAGTGGAGATGTCCCTTCGTCAGTCATAGAGAAACTACCTTTAATGGAGAAATACAACTTCTCTTATAATAACTTAACCTTCTGTGCTTTGGAAATCAAACCAGCTATCCTCCAAACAGTATTCTATGGATCAGTTAACAGTTTTCCAATTGCTGCAAACCCAAGTCTTCTTAAAAAAAGAGCCACTCAAGATAAGGGAATGAAGCTAGCTCTGGCATTGACCCTCTCAATGATCTGCTTGGTTGCTGGGGTTTTGCGTCTAGCATTTGGTTGCCTTAAGAAAACAAAGCCATGGCTTGTTAAGCAGACTTCATACAAAGAAGAACACAATATGTCAGGTCCCTTTTCATTCCACACTGATTCAACCACTTGGGTGGCTGATGTTAAGCAAGCAACATCTGTCCCGGTAATAATCTTTGATAAGCCACAGTTAAATATTACATTTGCAGACCTATTGGATGCAAATTCAAATTTTGACAGCGGTACCCTTTTGGCTGAAGGAAAATTTGGGCCTGTTTATAGAGGTTTTCTACCTGGTGGTATTCATGTAGCAGTTAAAGTTCTGGTGGTTGGATCTACTCTGACAGATAAAGAAGCTGCAAGAGAGCTCGAGTATCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTCTAACTGGGTATTGTGTAGCTGGGGATCAGAGGATTGCCATATATGACTACATGGAGAATGGGAACTTGCAAAATTTGCTTTATGACTTGCCACTTGGTGTACTACAAAGGACAGATGATTGGAGCACAGATACATGGGAAGAAGATGATGGCAGTAATGGGATTCAAAACGCAGGATCAGAAGGAGTGCTCACAACTTGGAGATTTCGCCATAAAATCGCACTCGGCACTGCCCGAGCATTGGCATTTCTGCATCATGGATGCTCCCCACCGATCATCCACAGAGATGTTAAGGCTAGCCGTATTTGCGGGAGTGGCTTGGATGAGGAGATTGCGCTTTGTTCACCTGGTTATGCTCCACCAGAGTTTTATCAACCAGAATTTGACGCCTCAATTCTAAAATCTGATGTGTACTGTTTTGGGGTTGTTCTCTTTGAGCTACTAACCGGGAAGAAGCCAGTTGGAGATGATTATCCTGATGAGAAAGAATCAACTTTGGTTAGTTGGGTCAGAAGACTAGTGAGAAAGAACAAATCTCCGAATGCTATCGATCGAAAATTC 2079 0.4141 MGLGVFGSILILTLFFKHLASQQPNTDDFFVSEFLKKMGLATPQVYNFSASVCYGVSCDAKREHVVGLLKSLNLSSNQISGSLTNNIGNFGLLHVFDLSSNNFSGQIPEAISSLMSLKVLKLNHNRFEQRLPSGILRCHSLVSIDLSSNQLSGAIPDGFGDAFPNLITLNLAGNSIHGSDSDISGLKSIVSLNISGNSFHGSVMSLFHGRLEVMDLSRNQFEGHISQIEIILGLEYLNLSKTSLIGYIPAEISQLSNLSALDVSINHLTGKIPLLSNKNLQVLDLSNNNLSGDVPSSVIEKLPLMEKYNFSYNNLTFCALEIKPAILQTVFYGSVNSFPIAANPSLLKKRATQDKGMKLALALTLSMICLVAGVLRLAFGCLKKTKPWLVKQTSYKEEHNMSGPFSFHTDSTTWVADVKQATSVPVIIFDKPQLNITFADLLDANSNFDSGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQRTDDWSTDTWEEDDGSNGIQNAGSEGVLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASRICGSGLDEEIALCSPGYAPPEFYQPEFDASILKSDVYCFGVVLFELLTGKKPVGDDYPDEKESTLVSWVRRLVRKNKSPNAIDRKF 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01420 693 Gene3D Ribonuclease Inhibitor 43 137 IPR032675 -
Gma12g01420 693 Gene3D Ribonuclease Inhibitor 138 231 IPR032675 -
Gma12g01420 693 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 69 230 - -
Gma12g01420 693 Pfam Leucine Rich Repeat 279 297 IPR001611 GO:0005515
Gma12g01420 693 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 228 692 - -
Gma12g01420 693 ProSiteProfiles Protein kinase domain profile. 448 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01420 693 Gene3D Phosphorylase Kinase; domain 1 408 523 - -
Gma12g01420 693 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 69 230 - -
Gma12g01420 693 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 69 - -
Gma12g01420 693 SMART LRR_typ_2 163 186 IPR003591 -
Gma12g01420 693 SMART LRR_typ_2 66 90 IPR003591 -
Gma12g01420 693 SMART LRR_typ_2 114 138 IPR003591 -
Gma12g01420 693 SMART LRR_typ_2 278 301 IPR003591 -
Gma12g01420 693 Pfam Protein tyrosine and serine/threonine kinase 452 684 IPR001245 GO:0004672|GO:0006468
Gma12g01420 693 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 228 692 - -
Gma12g01420 693 Gene3D Ribonuclease Inhibitor 232 324 IPR032675 -
Gma12g01420 693 SUPERFAMILY L domain-like 65 315 - -
Gma12g01420 693 Pfam Leucine rich repeat 140 198 IPR001611 GO:0005515
Gma12g01420 693 Gene3D Transferase(Phosphotransferase) domain 1 559 693 - -
Gma12g01420 693 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 1 69 - -
Gma12g01420 693 ProSiteProfiles Leucine-rich repeat profile. 279 301 IPR001611 GO:0005515
Gma12g01420 693 SUPERFAMILY Protein kinase-like (PK-like) 427 680 IPR011009 -
Gma12g01420 693 PRINTS Leucine-rich repeat signature 141 154 - -
Gma12g01420 693 PRINTS Leucine-rich repeat signature 277 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01420 Gma-Chr12 24389573 24391998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01420 69 678 Receptor kinase-like Gene Family AT4G39400 30.791 4.48e-81 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Gma12g01420 PK_Tyr_Ser-Thr 1.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01420 - - gmx:100807051 1176.39