Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01417 ATGGCCCTCCAATTTCGTACTGCTTATATTGCTCCATCATCTCGTGTTTTTGGACGGGGTGAGCTTGTGATAGATCCAGCACAGATAGCCAAACGATACCTGCGGCGGTATTTCATTGTTGATTTTCTATCAGTGTTGCCTTTACCACAGATTGTGGTTTGGAGATTTCTGCAGAGGTCAAAAGGTTCAGTTGTACTTGCAACAAAGAGGGCCCTTCTGTTCATCATTTTGCATCAGTACATTCCTAGATTTTTCCGGATGGTACCGTTGACTTCTGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGGGCTGCATATTATTTGCTATTATTTATGCTTGCTAGTCATATAGTTGGGTCGTTTTGGTACTTGTTAGCTGTTGAACGCAATGACTTTTGCTGGCAAAAGGCTTGTAGTGGCAATGGGTACAATAAAAATTTCTTGTATTGTGGCAACCAATACATGGAAGGTTATAGTGCCTGGCAGAATAGAAGTAAAGATATTCTTACATCACAGTGCTCTGTAGATAATGATAATTCACCTTTTGACTATGGAATTTTCAAACAAGCCTTGTCATCTCGTATTGTTTCATCTAAGAAGTTCTTCTCCAAGTACTGTTACTGTTTATGGTGGGGGCTCCAAAATTTAAGTACACTTGGCCAGGGGCTTGAAACAAGCACCTACACTGGGGAGGTTGTCTTTTCAATAGCACTAGCCATAGCTGGCCTTATCCTATTTGCACTTCTGATTGGTAACATGCAGACATATCTTCAGTCTCTTACAATTAGACTTGAGGAAATGAGAGTCAAAAGACGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGAGCTTAGAGAGCGTGTGAGACGATATGATCAATACAAGTGGTTGGCAACACGTGGTGTAGATGAAGAAAGTTTGGTTCAGAGTTTGCCAAAGGATCTTCGAAGAGACATTAAGCGTCACCTTTGTCTGGCTCTAGTGAGAAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAGCCATGCTTATTTACAGAGAGTACTTACATTGTTCGTGAAGGAGATCCAGTTGATGAGATGCTCTTCATCATACGGGGTCGCCTTGAGAGTGTTACTACAGATGGTGGGAGGAGTGGATTCTTCAATCGTGGTTTTTTAAAAGAGGCCGACTTCTGTGGGGAGGAGCTTTTGACCTGGGCACTGGATCCCAAATCTGGCTCTAATCTCCCATCTTCTACTCGAACAGTTAAAGCTTTAACAGAAGTTGAAGCTTTTGCCTTAACTGCTGAAGAGTTAAAGTTTGTTGCCAGTCAGTTTAGGCGCCTGCACAGTAGACAGGTTCAGCACACCTTTCGCTTTTACTCCCAACAGTGGAGGACTTGGGCTGCATGCTTTATTCAAGCAGCCTGGCGTCGCTATTCCAAAAGGAAAACTATGGAGCTTAGTCAGAAGGACGAACCTGAGGAGTCAGAAGGAACTCGTGGCAATGCCAGTGGCAGTTCGTACAGCCTTGGTGCCACCTTCTTGGCCTCCAGATTTGCTGCAAATGCTCTTCGTGGTGTACATCGGAATCGGGAAGCCAAGAGTGCCAGGGAGTTGGTGAAACTACAGAAACCTCCAGAGCCTGACTTCACTGCTGATGATGCAGACTAA 1707 0.4429 MALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIVDFLSVLPLPQIVVWRFLQRSKGSVVLATKRALLFIILHQYIPRFFRMVPLTSELKRTAGVFAETAWAGAAYYLLLFMLASHIVGSFWYLLAVERNDFCWQKACSGNGYNKNFLYCGNQYMEGYSAWQNRSKDILTSQCSVDNDNSPFDYGIFKQALSSRIVSSKKFFSKYCYCLWWGLQNLSTLGQGLETSTYTGEVVFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEESLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKTMELSQKDEPEESEGTRGNASGSSYSLGATFLASRFAANALRGVHRNREAKSARELVKLQKPPEPDFTADDAD 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01417 568 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 565 - -
Gma12g01417 568 SUPERFAMILY Voltage-gated potassium channels 3 263 - -
Gma12g01417 568 MobiDBLite consensus disorder prediction 495 517 - -
Gma12g01417 568 MobiDBLite consensus disorder prediction 495 510 - -
Gma12g01417 568 Gene3D - 1 266 - -
Gma12g01417 568 Pfam Cyclic nucleotide-binding domain 363 452 IPR000595 -
Gma12g01417 568 Pfam Ion transport protein 1 267 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gma12g01417 568 MobiDBLite consensus disorder prediction 543 568 - -
Gma12g01417 568 Gene3D Jelly Rolls 339 459 IPR014710 -
Gma12g01417 568 PRINTS EAG/ELK/ERG potassium channel family signature 1 10 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma12g01417 568 PRINTS EAG/ELK/ERG potassium channel family signature 118 128 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma12g01417 568 PRINTS EAG/ELK/ERG potassium channel family signature 236 247 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma12g01417 568 PRINTS EAG/ELK/ERG potassium channel family signature 254 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma12g01417 568 PRINTS EAG/ELK/ERG potassium channel family signature 304 311 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gma12g01417 568 CDD CAP_ED 341 472 IPR000595 -
Gma12g01417 568 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 1 565 - -
Gma12g01417 568 SUPERFAMILY cAMP-binding domain-like 270 461 IPR018490 -
Gma12g01417 568 ProSiteProfiles cAMP/cGMP binding motif profile. 341 471 IPR000595 -
Gma12g01417 568 Gene3D Helix hairpin bin 269 332 - -
Gma12g01417 568 SMART cnmp_10 341 472 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01417 Gma-Chr12 24290438 24304034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01417 1 565 Ion Channels AT5G57940 81.162 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01417 K05391 - gmx:100820202 1133.63