Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01388 ATGTCAGCAACGGCGCAGGCACCATCGTCGACCCCGACAGTTGTTTCATTTCTAGCGAGGCCGAGTCCCAGAAACTCGTCATCGAAATACAAAGGTGTGGTGCCACAATCGAATGGTCATTCGGGAGCTCAGATTTACAAGAAGCACCAGCGTGTGTGGGTCGGCACTTTCAACGAGGAAGACAAAGCCGCCAGAGCCTACAACATCGTTGCACAACACTTTCGAGGCCGCGACGCCGTCACCAACTTAAAGCCTTTTGCTGCCATCGCCGAGTCCGAGTTCCTCAACTCACATTCCAAGTTTGAGATCCTCCTTCACAAGCACACCTATGACAACAAGCTTCAGCACAACACACGCGGTGGCAGGCGCCGTCACAATGCCGACACCGCGTTGAGCGGCGTGTGTGACACAAAAGCGCGAACCGTCGTCGGTGGAGTGTCTTGGAATATTATTATTTTAGTAGTGCATTGCCCTTCTTTCAGTGAATCCTCCTACGATGGTATTAATGACATGTCTTGGATGGTCAAGAGATTTTTCCTCCCTTTCTCTAGACTAGCTTTGGCTTCTATGTCTTTTCATCTTAGAGTGATGATCTTGGCTGACTTGGGTGATATAAACGTCAAGGTGCTCATATGGGTTAGTGGTACCATAGTACTTCTCGATGGTGAGGTTCTTCTAGTTGGGAAGGAGGGTGGCTTCCATGACACCGAGGAAAAAGGTGTTCTTGAACTACTGTAG 738 0.4959 MSATAQAPSSTPTVVSFLARPSPRNSSSKYKGVVPQSNGHSGAQIYKKHQRVWVGTFNEEDKAARAYNIVAQHFRGRDAVTNLKPFAAIAESEFLNSHSKFEILLHKHTYDNKLQHNTRGGRRRHNADTALSGVCDTKARTVVGGVSWNIIILVVHCPSFSESSYDGINDMSWMVKRFFLPFSRLALASMSFHLRVMILADLGDINVKVLIWVSGTIVLLDGEVLLVGKEGGFHDTEEKGVLELL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01388 245 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 23 141 IPR044800 GO:0003700
Gma12g01388 245 SUPERFAMILY DNA-binding domain 28 84 IPR016177 GO:0003677
Gma12g01388 245 MobiDBLite consensus disorder prediction 1 42 - -
Gma12g01388 245 Gene3D AP2/ERF domain 28 84 IPR036955 GO:0003700|GO:0006355
Gma12g01388 245 CDD AP2 28 82 IPR001471 GO:0003700|GO:0006355
Gma12g01388 245 ProSiteProfiles AP2/ERF domain profile. 29 84 IPR001471 GO:0003700|GO:0006355
Gma12g01388 245 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 23 141 - -
Gma12g01388 245 SMART rav1_2 29 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01388 Gma-Chr12 21964782 21966663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01388 27 119 RAV Transcription Factor Family AT3G25730 64.211 1.46e-35 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01388 K09287 - gmx:100818070 286.574