Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01378 ATGGTCTGTGAACACATATGGAATTTTGATCTTCATTTCAGTCCTTCGCTTGAACAACAGACATGTGGCAGACCCCTACTAGCATTTAGAATGCATGTCTGGACTATTGAACTCACTCAAGCCCTGCTTGGTGATCCTAAACCACTGATTCATCCACCTATTGCAGCAATACACCTTCCTTCTTGTGGTTTCCATATGACCATTTTAAGAAAGTTCAGGCCTCCATTACAATGGTTTGTCGTCCCAGTTGGCCCTGGCTTTCACGGAAAATATTTTGCGGAGCCATGGTATTGGTTTCTTTCTAAAGATGATTTTGTTCGCGGAGACGAACTTTTATTCTATTACAGAAGTCGTGAGGATATTTGGGAAATGGGCCCATCAAACTGGTTGGCAGCAATACGGTTTTTGGCCGCATTCTGTGTTTCCAAGAACATCATTGAGGTTCCATTGTCTTACCATAGACAATGGAGGTCATATTACCCGACGTATGTTTTGTTTCAGTATAATGGAACCACACATTTTGCTAGGCTTCGCAAATATGGTAGCCGATACTTTTTTGCTAATAGGCTAAAACAGTTTAGAAGAACTCACGGCATTGACGATAGTGTCATCATGCGGTTTTTTGCTGCTGACAAAAATACTTCCTTCGAGGTGGATGTCATTGGACCTATCCATAGGCAGGGCCGTCCAAGGTCGGTTCAGGCAACCAGGAGACACATCTTTACAGCCGATGTCATCGAACACATGATGCAACACAGCTTCCCTTTGCTCCTTCCACCAGCAGCTTTAAATTTTTTGTTTGGATCACAAAAAGTAATTCTTGTTCAGAGAGGCTATGGCAAACGCAACCAATGGCAGATCACCATGCACGATGGTGTGCCATCTATTGCCCAGCCATGGTTCCAATATCTCTATGAAAATAATTTAATGGCTGGAGAAGAGGCGAATGTTCGAGGCAGGGCCAACAAAATCGGACTGATGGCACGTATTGATGACAAGATAAAATCCATTGATGGATCTAAAGAAACTCTGAAACTTGCTGTAAGGATAACCAAGCTCTGGTTTGTTGGGACGCCGGGTAGGTCTGAACAAGCTGAGATGATCATCGTTGACTCTGATGGTGATCAAATCCATGTGGTCTGTAAGCAAGACCAGTTAAAGACATGGAAAATGGATTTGAAGGAAGGTTGTACTTATGTGATGCACAATTTTAGAGTCAGCAAGAATGATGGACAGTACAGAGTTTGTGATCATCCATATAAATTGACATTTATTGAAGTTACAGTTGTCAGACAATGTGAATTGGATGGGCTTCCTTTTAAAAATTATAGATTTGCAGATTTTTCGGATGTCGTTGCTAGCCAATTACAGTCTGGCCTATTAGTAGACATCATTGGTGTGGTTGACGAGGTTGTCTTTCGTCATATTTCATCCAGAAGTAAAAGAGTTGTTTTTAAGCTTATGAATTTGAGTAACCAATTGTTGTCTTGCACTCTATGGGATGATCATTGTCTCCAATTTTTGGAATATTTGGATCAGCATGAGACTGAAAGACCTATTATTGTGTTGTTGACCAATGCCAGAATTAAAGAGGGCCAGGGATCCTATCCATCCTCGGTTAGCAATTCTTTGAAGGCTTCTAAATTGACTATTAATCAGCCAGTGGCACCAATTGAAGAATTCAATTAG 1689 0.4133 MVCEHIWNFDLHFSPSLEQQTCGRPLLAFRMHVWTIELTQALLGDPKPLIHPPIAAIHLPSCGFHMTILRKFRPPLQWFVVPVGPGFHGKYFAEPWYWFLSKDDFVRGDELLFYYRSREDIWEMGPSNWLAAIRFLAAFCVSKNIIEVPLSYHRQWRSYYPTYVLFQYNGTTHFARLRKYGSRYFFANRLKQFRRTHGIDDSVIMRFFAADKNTSFEVDVIGPIHRQGRPRSVQATRRHIFTADVIEHMMQHSFPLLLPPAALNFLFGSQKVILVQRGYGKRNQWQITMHDGVPSIAQPWFQYLYENNLMAGEEANVRGRANKIGLMARIDDKIKSIDGSKETLKLAVRITKLWFVGTPGRSEQAEMIIVDSDGDQIHVVCKQDQLKTWKMDLKEGCTYVMHNFRVSKNDGQYRVCDHPYKLTFIEVTVVRQCELDGLPFKNYRFADFSDVVASQLQSGLLVDIIGVVDEVVFRHISSRSKRVVFKLMNLSNQLLSCTLWDDHCLQFLEYLDQHETERPIIVLLTNARIKEGQGSYPSSVSNSLKASKLTINQPVAPIEEFN 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01378 562 CDD RPA1_DBD_A_like 345 430 - -
Gma12g01378 562 PANTHER REPLICATION FACTOR A 1, RFA1 337 547 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma12g01378 562 SUPERFAMILY Nucleic acid-binding proteins 442 558 IPR012340 -
Gma12g01378 562 Gene3D - 437 562 IPR012340 -
Gma12g01378 562 SUPERFAMILY Nucleic acid-binding proteins 333 433 IPR012340 -
Gma12g01378 562 Pfam Domain of unknown function DUF223 366 456 IPR003871 -
Gma12g01378 562 Gene3D - 332 433 IPR012340 -
Gma12g01378 562 CDD RPA1_DBD_B_like 463 562 - -
Gma12g01378 562 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 337 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01378 Gma-Chr12 21746912 21755773 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01378 369 543 Core DNA Replication Machinery Family AT5G45400 19.672 3.47e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01378 - - gsj:114416011 411.379