Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01320 ATGTTTCAAACTTCCACTTCACTAGACAGTTTAGCAGTGAGTCAATCCATCAGAGATGGCGAGACTTTGGTTTTAGCTGGTGGAATTACTAAAGTGGGTTTCTTTAGCCCGGGAAATTCAACAAGACGATACTTGGGTATATGGTACACAAATGTATACCCTTCAACAGTGAGTTTTGATTATCCGTGTGATATGTTGATGCTGGGAATGAAACTTGGATGGAACTTAGAGATGGGTCTAGAAAGATCTTTATCCTCTTGGAAAAGTGTTAACGATCCTGTGGAGGGAGAATATACTTTAAAACTTGATCTGGAAGGATATCCTCATGCAGTTATACACAAGGGACCAGAGATAAAGATCAGAAAGGGGCCATGGAATGGCCAGTCTTGGCCCGAATTTCCAGATCCAACTCTTAAAATATCACAAATATTTGTGTTCAATAAAAAAAAGGTGTCTTATAAATTCAAGTTTCTTGATAAATTGATGTTCAGCATATATACGCTGACCCCTTTTGGCACCGGAGAAAGCTTTTATTGGACAATTGAAACAAGTAACCAACAATTTTCTGAATACTCCTCAATTTTTCCTAATGGTTGTTTCCCAACAATTAAATCTAATTGCAATGGCAGTCAGTCAGATGGCTTCTTGAAGTACAAGCACATGAAATTGCCAGACACATCTTCATCATGGTTTAGTAAGACCATGAATCTTGAGGATTGCAAGAAGTTGTGTCTGGAAAACTGTTCTTGTGTAGCATATGCAAATTTAGACATGCGTGGTGGAGGAAGTGGCTGTCTACTTTGGTTTAGTAATCTGGTTTACATGAGAAAATTCTCTCAATGGGGACAAGACATTTATGTCAGACTCCCAGCTTCAAAACTAGCTGCCAATGGAAACCTCAAGAAAAAGATAGTGGGAATCACTGTTGGTGTGACTATTTTTGGATTAATCATAACATGTGTATGCATATTGATACTTAAAAATTCAGGGGCAGCAAGAAAAATTTACGGCAAACATTACAAAAGCATACAAAGGAAGGAAGACATTGATTTGCCAAATTTCAATTTATCAGTCTTAGCTAAAGCCACTGAAAACTTTTCAACCAAAAACAAGCTTGGAGAAGGTGGCTTTGGACAAGTATATAAGGGCACATTGAAAGATGGACAAGAATTAGCGGTGAAAAGGCTTTCAAACAACTCTGGTCAAGGGTTAGAAGAGTTTAAAAATGAAGTAGCCTTGATTGCCAAACTTCAGCACCGTAATCTTGTAAAGCTTCTTGGATGCTGCATCGAAAGAGAAGAAAAAATGTTGGTCTATGAATACATGTCCAACAAAAGCTTGAACTACTTTGTTTTTGATGAAACTAAAGGCAAGTTACTAGATTGGTGTAAGCGTTTCAACATTATCTGTGGCATTGCTCGCGGATTATTGTATCTTCATCAAGATTCAAGGCTGAGGATTATTCATAGAGATCTTAAAACTAGCAACATTTTAGTGGATTCAAATTGGGACCCCAAGATATCCGACTTTGGCTTGGCTCGATCATTTTTGGAAGATCAATTTGAAGCAAAGACCAATAGGGTGGTTGGAACTTACGGTTACATGCCTCCTGAGTATGCTGTACGTGGGAATTTCTCGGTGAAATCAGATGTATTTAGTTTTGGTGTAATAATACTAGAGATTGTTAGTGGGAAGAAAAACAGGGAATTTTCAGACCCAGAACACTGCCATAATCTTCTTGGACATGCATGGAGATTATGGGTAGAAGAGAGGGCACTAGACCTATTGGATAAAGTGTTAGAAGAACAATGTAGACCATTTGAAGTCATACGATGCATACAAGTGGGCTTATTATGTGTACAAAGAAGACCAGAACACAGACCAGATATGTCATCAGTGGTTCCAATGTTGAATGGAGAGAAATTATTGCCAGAACCAACGGTTCCTGCCTTTTACAATGAGACAATTATAACTGAAGTAAATTGCAAATTATGCTCATCAAATGAACTTTCGATAACGCAATTAGATGCAAGATAG 2037 0.3795 MFQTSTSLDSLAVSQSIRDGETLVLAGGITKVGFFSPGNSTRRYLGIWYTNVYPSTVSFDYPCDMLMLGMKLGWNLEMGLERSLSSWKSVNDPVEGEYTLKLDLEGYPHAVIHKGPEIKIRKGPWNGQSWPEFPDPTLKISQIFVFNKKKVSYKFKFLDKLMFSIYTLTPFGTGESFYWTIETSNQQFSEYSSIFPNGCFPTIKSNCNGSQSDGFLKYKHMKLPDTSSSWFSKTMNLEDCKKLCLENCSCVAYANLDMRGGGSGCLLWFSNLVYMRKFSQWGQDIYVRLPASKLAANGNLKKKIVGITVGVTIFGLIITCVCILILKNSGAARKIYGKHYKSIQRKEDIDLPNFNLSVLAKATENFSTKNKLGEGGFGQVYKGTLKDGQELAVKRLSNNSGQGLEEFKNEVALIAKLQHRNLVKLLGCCIEREEKMLVYEYMSNKSLNYFVFDETKGKLLDWCKRFNIICGIARGLLYLHQDSRLRIIHRDLKTSNILVDSNWDPKISDFGLARSFLEDQFEAKTNRVVGTYGYMPPEYAVRGNFSVKSDVFSFGVIILEIVSGKKNREFSDPEHCHNLLGHAWRLWVEERALDLLDKVLEEQCRPFEVIRCIQVGLLCVQRRPEHRPDMSSVVPMLNGEKLLPEPTVPAFYNETIITEVNCKLCSSNELSITQLDAR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01320 678 SUPERFAMILY Protein kinase-like (PK-like) 350 651 IPR011009 -
Gma12g01320 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Gma12g01320 678 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 58 189 - -
Gma12g01320 678 Gene3D Hepatocyte Growth Factor 206 287 - -
Gma12g01320 678 Pfam PAN-like domain 207 273 IPR003609 -
Gma12g01320 678 Gene3D Phosphorylase Kinase; domain 1 328 441 - -
Gma12g01320 678 CDD PAN_AP_plant 204 290 - -
Gma12g01320 678 Gene3D Transferase(Phosphotransferase) domain 1 442 643 - -
Gma12g01320 678 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 57 - -
Gma12g01320 678 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 203 675 - -
Gma12g01320 678 ProSiteProfiles Protein kinase domain profile. 366 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01320 678 SMART serkin_6 366 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01320 678 SMART ntp_6 210 289 IPR003609 -
Gma12g01320 678 ProSitePatterns Protein kinases ATP-binding region signature. 372 394 IPR017441 GO:0005524
Gma12g01320 678 ProSiteProfiles PAN/Apple domain profile. 207 290 IPR003609 -
Gma12g01320 678 Pfam Protein tyrosine and serine/threonine kinase 368 636 IPR001245 GO:0004672|GO:0006468
Gma12g01320 678 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 203 675 - -
Gma12g01320 678 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 58 189 - -
Gma12g01320 678 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 57 - -
Gma12g01320 678 CDD STKc_IRAK 372 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01320 Gma-Chr12 19382385 19441663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01320 338 652 Receptor kinase-like Gene Family AT4G11480 58.385 1.86e-125 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma12g01320 PK_Tyr_Ser-Thr 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01320 - - gmx:102667134 996.882