Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01296 ATGTCAGATGATCAATTTCAAGCAAGTGGAAACTGGTGGGAAACAGCAAGAAGCGTGAGATTTGAGAGTAGAGAATCACAATCTTCTTCTGGCCTCACCAACAACATTGGAAGCTATGCAGCTTCTTGGCAACAACATCAACAACATGACATGGCAACAAGGTCTTCTTCCATGGATAACAACTCTGTCTCAGGTGGTTCCTCTGTGGTCTTCCATGACCAGAAGCAGCTTCAAGTTCATGATTCATCACCAGCAGCCACTTCCACCAATGACCCCAACTTTCACATGATGGCCTTGGGCCTCTCATCTCAAGCCATGGACTGGAGTCAAGCATCTTTGCCGCTGCGAGGTGAGAAGGGTTCAGAGAACAGTTTCAGGTCGATGTTGCAAGAGAATTTGAGCTCATCAGGCACAAATTTTCAGCAGCAAGAATGTGGGAGCAACAGTATAGGCTTGTCTCAACACCACCATCACCATCATCAACAAGTTCATTGGAAACCAGAAAAGTTGTTCTCAGCTGAGTCATCAAGCAACGAATTCAAGAGGGGTTTCTCCTTGGACCAAACACAGTTTTCTCCTCAATACAGCTCCGGGGACAGCACTGTCACAAGCCAAGGCTTGCCTTGTTCTTTTCAGATAGACTATGTTGGGAACCCTTCTTCAATATTGCAAGGTCTTTTGGGACAAGAGAGCAACAACAACCAACAACAACCCCACCAAGGTGGTGGTGCCATGAATTTTCCTTACTCAGCAGCAAGCTATGGATTGAACTCGAATATTGAGTTGGTGCCTTCTTGGTCTAAAGTTCCTCAGTTTCTGAGAGCTTCTCCGCCAAAACAACCCCCCAATAACCAGTTGCATTTCACCAACAACGCTCCCTTTTGGAACGCTAATTCTGAGCCTGCTATTAAGGATTCTCGATCCAACTTTATCCCCTCTTTGCAACCTCCCTTCCCCACATCAAATTTCGATGTACAATCGAAGAATATATCTGAAGTTAGAGATTCGAGTGGTGTGGTGAAGAAAAGTGGGAGTGAGGCAGCACCCAAAAGGCCCAGGAACGAAACCCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCGTCAGTGCTCTCTGAAGCCATTGAATATATCAAATTCCTCCATGAACAAGTGACTGTGCTAAGTACCCCGTATATGAAAAGTGGTGCTCCAATACAACATCAGCAGAGTTCTGGAAAATCTAAGGAATCTAAGGGTCCAAAGCAGGATCTTAGAAGCCGAGGGCTATGTCTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCACGAACCCACAGTTGAGTATTGGACACCAACATTTGGAGGAACTTACAGATAG 1425 0.4561 MSDDQFQASGNWWETARSVRFESRESQSSSGLTNNIGSYAASWQQHQQHDMATRSSSMDNNSVSGGSSVVFHDQKQLQVHDSSPAATSTNDPNFHMMALGLSSQAMDWSQASLPLRGEKGSENSFRSMLQENLSSSGTNFQQQECGSNSIGLSQHHHHHHQQVHWKPEKLFSAESSSNEFKRGFSLDQTQFSPQYSSGDSTVTSQGLPCSFQIDYVGNPSSILQGLLGQESNNNQQQPHQGGGAMNFPYSAASYGLNSNIELVPSWSKVPQFLRASPPKQPPNNQLHFTNNAPFWNANSEPAIKDSRSNFIPSLQPPFPTSNFDVQSKNISEVRDSSGVVKKSGSEAAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKESKGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01296 474 Gene3D - 364 426 IPR036638 GO:0046983
Gma12g01296 474 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 364 421 IPR036638 GO:0046983
Gma12g01296 474 MobiDBLite consensus disorder prediction 332 362 - -
Gma12g01296 474 CDD bHLH_AtbHLH_like 360 411 IPR045239 -
Gma12g01296 474 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 463 - -
Gma12g01296 474 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 8 463 - -
Gma12g01296 474 SMART finulus 365 409 IPR011598 GO:0046983
Gma12g01296 474 MobiDBLite consensus disorder prediction 42 65 - -
Gma12g01296 474 MobiDBLite consensus disorder prediction 418 442 - -
Gma12g01296 474 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 354 403 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01296 Gma-Chr12 18274542 18277917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01296 116 474 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 46.329 5.90e-81 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01296 - - gmx:100818424 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01296 12 18274542 18277917 Gma12g01296 12 18274542 18277917 ECH