Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01290 ATGCTTTTGGACAAGAATGATATTCAAGAAACCCATTATGAGGTTCTCCATGTCAAGGAACATGCAAATTATGAAGAAATTCGGGCTAGTTACCGAAGTGTTGTACTCAGCTTACATCCTGATAAGCTATTGAAGACTTCCAAGACATCCAGCAGTAATCAAACAACCAGAGAGATTTCTCAAAGTACAGAAGGCGTGGGAGATTCTGTgaaggatgtcttggctgctgatgttgccgaagatttgagcttacaggaTATGATGATTGAAGATGATGGAGAAGCATTGGAACTGTTTTATCAATGCAGATGCGGCGATTACTTCTCTGTAGACTCTTGGAATTGA 345 0.3391 MLLDKNDIQETHYEVLHVKEHANYEEIRASYRSVVLSLHPDKLLKTSKTSSSNQTTREISQSTEGVGDSVKDVLAADVAEDLSLQDMMIEDDGEALELFYQCRCGDYFSVDSWN 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01290 114 Pfam DnaJ domain 11 69 IPR001623 -
Gma12g01290 114 Gene3D DPH Zinc finger 72 114 IPR036671 -
Gma12g01290 114 PANTHER DPH3 HOMOLOG-RELATED 1 112 IPR044248 GO:0017183|GO:0046872
Gma12g01290 114 CDD DnaJ 11 42 IPR001623 -
Gma12g01290 114 PRINTS DnaJ domain signature 31 46 IPR001623 -
Gma12g01290 114 PRINTS DnaJ domain signature 13 31 IPR001623 -
Gma12g01290 114 PRINTS DnaJ domain signature 51 71 IPR001623 -
Gma12g01290 114 ProSiteProfiles dnaJ domain profile. 11 71 IPR001623 -
Gma12g01290 114 SMART dnaj_3 10 71 IPR001623 -
Gma12g01290 114 Gene3D DnaJ domain 2 71 IPR036869 -
Gma12g01290 114 MobiDBLite consensus disorder prediction 46 65 - -
Gma12g01290 114 PANTHER DIPHTHAMIDE BIOSYNTHESIS PROTEIN 4 1 112 - -
Gma12g01290 114 SUPERFAMILY Chaperone J-domain 10 64 IPR036869 -
Gma12g01290 114 SUPERFAMILY CSL zinc finger 79 111 IPR036671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01290 Gma-Chr12 18052961 18053399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01290 12 57 C2H2 Transcription Factor Family AT1G74250 43.478 1.43e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01290 K17867 - gmx:100814856 165.622