Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01279 ATGGAAATTTTTTCTGTCGTGATTTTTATTGTTTCTTATATGCTCGTTCCATCTCTCAAAATTTCCGCAGCTACCCTCGATGTGTCACAGTATGTCACAGACGGTGAGACCTTGGTGTCCAACAGTGGAGTTTTTGAGCTTGGTTTTTTCAGCCCGGGAAAATCCACAAAGCGTTACCTGGGGATTTGGTATAAAAATATTACTAGTGATAGAGCTGTTTGGGTTGCAAACCGGGAAAACCCTATCAATGATTCCTCAGGCATCTTAACATTCAGCACCACAGGCAATCTTGAGCTCAGACAAAATGACTCCGTTGTTTGGTCTACTAACTATAAAAAACAAGCACAGAATCCAGTAGCAGAGCTCTTAGACACTGGAAATTTTGTGGTAAGAAATGAGGGAGACACAGATCCAGAAACGTACTCGTGGCAAAGCTTTGACTATCCTTCAGATACACTTTTGCCCGGAATGAAGTTGGGATGGGACCTCAGAACCGGTCTGGAACGCAAACTAACGTCTTGGAAGAGTCCTGATGATCCATCTGCTGGAGATTTCTCTTGGGGTCTAATGCTCCATAATTATCCTGAGTTTTATCTGATGATTGGAACACACAAGTACTACCGCACTGGACCATGGAATGGACTTCATTTCAGTGGATCATCAAACCGAACTCTAAATCCGCTGTATGAGTTCAAGTATGTCACTACAAATGATCTCATTTACGCCTCCAATAAGGTTGAGATGTTCTACTCGTTTAGCCTCAAGAATAGTTCTATCGTCATGATAGTCAACATAAATGAAACCCTATCTCAAATCCAAACCCAAGTATGGTCGGAGGACGGGCAAATATGGGTGATTTATGAAACTACCCCAGGAGATTACTGTGATGTGTATGCCGTCTGTGGACCCAACGCAAATTGCAGGATTACAGAACCACCTGTTTGCCAATGTTTAAAAGGATTCAAACCAAAGCCACCACAAGAATGGATCCCCTCAATGGATTGGAGTCAAGGATGTGTCCGACCTAAACCATTAAGCTGCGAAGAAATCGACTACATGGATCACTTTGTTAAATATGTAGGACTTAAGGTACCAGATACTACATATACTTGGCTGGATGAGAATATTAATTTAGAGGAATGCAGAATTAAATGCTTCAATAATTGCTCTTGCATGGCCTTTTCTAATTCAGACATAAGAGGAGGAGGTAGTGGTTGTGTCCTTTGGTTTGGCGATCTAATTGACATCAGACAGTATCCAACTGGCGAGCAAGATCTATATATCCGGATGCCTGCTATGGAGTCCATCAACCAACAAGAACATGGACACAACAGCGTGAAGATAATAATTGCTACAACAATTGCTGGAATCAGTGGGATACTTTCATTTTGCATTTTTGTCATATACAGAGTCCGAAGGAGCATTGCTGATAAGTTCAAGACAAAAGAGAACATCGAGAGACAGCTAAAAGATCTGGATCTGCCATTGTTTGATCTGCTGACAATCACTACTGCCACTTACAATTTCTCGTCAAATAGTAAAATTGGACATGGTGCTTTTGGACCTGTATACAAGGGAAAATTGGCCGATGGACAAGAAATTGCTGTGAAGAGACTTTCAAGCAGTTCTGGGCAAGGAATAACGGAGTTCGTAACAGAAGTAAAATTGATTGCAAAGCTTCAACACCGAAATCTTGTAAAGCTTCTTGGTTTTTGCATTAAACGACAAGAAAAAATACTAGTATATGAATACATGGTTAATGGAAGCCTAGACTCCTTTATTTTTGATAAAATAAAGGGTAAATTTCTGGATTGGCCTCGACGCTTCCACATAATATTTGGAATAGCTCGAGGACTTCTGTATCTTCATCAAGATTCTCGATTAAGGATTATCCATAGAGATCTCAAAGCAAGTAACGTTTTACTTGATGAAAAGTTAAATCCAAAAATATCAGATTTTGGAATGGCTAGAGCTTTTGGAGGAGACCAAACTGAAGGAAACACAAATAGAGTTGTTGGGACTTATGGATACATGGCCCCAGAGTATGCTGTTGATGGGCTATTTTCAATCAAATCTGACGTTTTTAGCTTTGGTATTTTGTTGTTGGAGATTATATGTGGTAACAAAAATAGAGCTCTCTGTCATGGAAACCAGACACTTAACCTTGTTGGTTATGCATGGACACTTTGGAAAGAGCAAAATGTTTTACAGTTGATTGACTCAAGCATAAAGGACTCGTGTGTCATTCCAGAAGTACTGCGATGCATCCATGTTAGTCTCTTGTGTGTGCAACAATACCCAGAGGATAGGCCATCTATGACCTTGGTAATTCAAATGTTAGGGAGTGAGACGGACCTGATTGAGCCAAAAGAGCCTGGTTTCTTTCCAAGGAGGTTTTCAGATGAAGGAAATTTAAGCACAATTCCTAATCATATGTCTTCGAATGAAGAATTAACCATTACCTCGTTAAATGGCCGGTGA 2481 0.4031 MEIFSVVIFIVSYMLVPSLKISAATLDVSQYVTDGETLVSNSGVFELGFFSPGKSTKRYLGIWYKNITSDRAVWVANRENPINDSSGILTFSTTGNLELRQNDSVVWSTNYKKQAQNPVAELLDTGNFVVRNEGDTDPETYSWQSFDYPSDTLLPGMKLGWDLRTGLERKLTSWKSPDDPSAGDFSWGLMLHNYPEFYLMIGTHKYYRTGPWNGLHFSGSSNRTLNPLYEFKYVTTNDLIYASNKVEMFYSFSLKNSSIVMIVNINETLSQIQTQVWSEDGQIWVIYETTPGDYCDVYAVCGPNANCRITEPPVCQCLKGFKPKPPQEWIPSMDWSQGCVRPKPLSCEEIDYMDHFVKYVGLKVPDTTYTWLDENINLEECRIKCFNNCSCMAFSNSDIRGGGSGCVLWFGDLIDIRQYPTGEQDLYIRMPAMESINQQEHGHNSVKIIIATTIAGISGILSFCIFVIYRVRRSIADKFKTKENIERQLKDLDLPLFDLLTITTATYNFSSNSKIGHGAFGPVYKGKLADGQEIAVKRLSSSSGQGITEFVTEVKLIAKLQHRNLVKLLGFCIKRQEKILVYEYMVNGSLDSFIFDKIKGKFLDWPRRFHIIFGIARGLLYLHQDSRLRIIHRDLKASNVLLDEKLNPKISDFGMARAFGGDQTEGNTNRVVGTYGYMAPEYAVDGLFSIKSDVFSFGILLLEIICGNKNRALCHGNQTLNLVGYAWTLWKEQNVLQLIDSSIKDSCVIPEVLRCIHVSLLCVQQYPEDRPSMTLVIQMLGSETDLIEPKEPGFFPRRFSDEGNLSTIPNHMSSNEELTITSLNGR 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01279 826 PIRSF SRK 1 826 IPR024171 GO:0004674
Gma12g01279 826 CDD B_lectin 29 149 IPR001480 -
Gma12g01279 826 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 33 825 - -
Gma12g01279 826 Gene3D Transferase(Phosphotransferase) domain 1 585 789 - -
Gma12g01279 826 Gene3D Phosphorylase Kinase; domain 1 469 584 - -
Gma12g01279 826 ProSiteProfiles Bulb-type lectin domain profile. 23 143 IPR001480 -
Gma12g01279 826 ProSiteProfiles EGF-like domain profile. 291 327 IPR000742 -
Gma12g01279 826 SMART serkin_6 509 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01279 826 SMART ntp_6 351 430 IPR003609 -
Gma12g01279 826 Pfam PAN-like domain 353 416 IPR003609 -
Gma12g01279 826 ProSiteProfiles Protein kinase domain profile. 509 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01279 826 CDD PAN_AP_plant 344 431 - -
Gma12g01279 826 ProSiteProfiles PAN/Apple domain profile. 347 431 IPR003609 -
Gma12g01279 826 Pfam D-mannose binding lectin 73 175 IPR001480 -
Gma12g01279 826 SUPERFAMILY Protein kinase-like (PK-like) 491 780 IPR011009 -
Gma12g01279 826 Pfam Protein tyrosine and serine/threonine kinase 512 779 IPR001245 GO:0004672|GO:0006468
Gma12g01279 826 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 33 825 - -
Gma12g01279 826 Pfam S-locus glycoprotein domain 207 324 IPR000858 GO:0048544
Gma12g01279 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Gma12g01279 826 Gene3D - 18 146 IPR036426 -
Gma12g01279 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 180 IPR036426 -
Gma12g01279 826 CDD STKc_IRAK 515 780 - -
Gma12g01279 826 SMART blect_4 29 149 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01279 Gma-Chr12 17651465 17666744 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01279 445 797 Receptor kinase-like Gene Family AT4G23190 52.925 1.14e-124 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma12g01279 PK_Tyr_Ser-Thr 2.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01279 - - gmx:100812007 1670.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01279 12 17651465 17666744 Gma06g02405 06 46116173 46122909 GST