Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01265 ATGGCGACGAGGGCAGCAGTGGCGGCGCCGCGCGTTTTTCGGCGGTTTTTCTGCACAAACTCAGCCTCTCCTTCTTTCCCCTTCGTTCCTACGCCGCCTCCTGGCGCCACCCCCACTCCAACTCGACCCACGGCGGAGCCCAACCCCAACCTCTTCGTCTCTGGTCTTAGCAAACGTACTACTACAGAAAGGCTTCGAGAGGAGTTTGCAAAGTTTGGTGAAGTTGTTCATGCAAGGGTTGTAACTGATCGAGTCTCAGGTTACTCTAAGGGTTTTGGTTTTGTTCAATATGCTACAATAGAAGAGGCTGCAAAGGGCATTGAAGGCATGGATGGCAAGTTTTTGGACGGTTGGGTTATATTTGCAGAGTATGCGAGACCAAGACCACCACCAGGCCAATCTCTAAATAACAACAGTCCTCAGTATGGCCGGCAGTGA 438 0.5205 MATRAAVAAPRVFRRFFCTNSASPSFPFVPTPPPGATPTPTRPTAEPNPNLFVSGLSKRTTTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEEAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQSLNNNSPQYGRQ 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01265 145 MobiDBLite consensus disorder prediction 28 54 - -
Gma12g01265 145 MobiDBLite consensus disorder prediction 131 145 - -
Gma12g01265 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Gma12g01265 145 SMART rrm1_1 50 123 IPR000504 GO:0003723
Gma12g01265 145 Gene3D - 30 136 IPR012677 -
Gma12g01265 145 SUPERFAMILY RNA-binding domain, RBD 33 144 IPR035979 GO:0003676
Gma12g01265 145 MobiDBLite consensus disorder prediction 28 45 - -
Gma12g01265 145 MobiDBLite consensus disorder prediction 126 145 - -
Gma12g01265 145 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 1 144 - -
Gma12g01265 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 117 IPR000504 GO:0003723
Gma12g01265 145 PANTHER TRANSFORMER-2-RELATED 1 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01265 Gma-Chr12 17354127 17358004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01265 50 126 Eukaryotic Initiation Factors Gene Family AT4G34110 36.364 5.28e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01265 - - gmx:100789351 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01265 12 17354127 17358004 Gma12g01265 12 17354127 17358004 ECH
Gma12g01265 12 17354127 17358004 Gma06g02416 06 46258688 46260970 GST