Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01248 ATGGCTTCTAACACTATCATCCAATGCAATCCTTCAACTTATACAAAAAGGAAATATGACGTGTTTGTGAGCTTTCGTGGTGAAGACTCACACAACAACTCCACTGGTTTTCTCTTTGAAGCTCTCCGAAAAAAAGGCATTGATGTCTTCAGAGATGATGTGAGTCTCAACAAAGGAAAATCCATAGCACCCAAGCTGCTTCAAGCCATTGAAGGGTCTCGCCTTTTCATTGTGGTGTTCTCAAAGAACTATGCTTCCTCTACTTGGTGCTTGCGTGAACTAGCACACATCTGCAATTGCATTGAAATATCGCCAAGACATGTTCTGCCTATTTTTTACGATGTTGGTCCATCAGAGGTGCGAAAACAAAGTGGAAGTTATGAGAAGCCTTTGCCCAACACGAAGAAAGATTTAGCTACAACAATATGCAGAGAGATTGAAGAAATTGTTCAAAACATACTAAAAATTTTGGGTCCCAAATTTTCAAGTCTTCCAAATGATCATCTAGTTGGGATGGAATACCGTGTTGAAGTATTAGTAAAGCTTTTAGAATTGGAGTTGTTTAATGTTGTTCGAGTTGTCAGAATTAGTGGGATGTGCGGAATAGGAAAGACAACTCTTGATTGTGCTTTATATGAAAGAATCTCTCATCATTATGATTTTTGTTGTTTTATTGATGATGTAAAGAAAATTTATCAAGATTCCGGTGCATTGTGCATTAGGTGTACAAAACAATTACTTTCTCAGTTTCTAAATGAAGAAAATCTAGAGATTTGTAATGTTTATGAGGGAACATGTTTGGTATGGTCTAGCCTACGAAATGCAAGAACACTCATAGTTATTGATCATGTTGATAAAGTTGGACAACTGATGATGTTTACAGGGAGAAGAGAAACTCTATTGCGTGAATGCCTAGGTGGAGGGAGTAGGTTGTTTTGCATAAATGTTTTCAAAAGTAATTATATTAAAAGTGGTTATGAAGAGTTGATGAAGGGTGTATTATCACATGTTGAAGGTCACCCCTTGGCAATTGATCGAAATATTGCTTGCTTCTTCGCTGATTATGACGAGGATTATGTTAAGGAAATTATAGATTTTTGCAGATTTCATCCTGAAAATGGCTTACGAGTTCTTGTTGATAAATCACTCATAAGTATTGAATTTGGAAAGATTTATATGCATGGCTTGTTGAGAGATTTGCGTAGGTATATTGTTCGAGAAGAATCACCTAAAGAGCCAAGAAAATGGAATAGGTTGTGGGATTACAAAGATCTCCACGAAGTTATGTTAGATAATAAGCCGCATAAGCTCGTTGAGATGTCCCTTCCTGATAGTAACATGAAACAATTATGGGAAGACACAAAGCCTCAACACAATTTGAGACATTTAGATATCTCTCACTCCAAAAATCTAATCAAGATACCAAATTTGggtgaggctataaatcttgagcatctaaatctcaaaggatgtacacaactcgggaagattgatccatccattgattgcacaagtctcatcaagttacaattttttggagaggctctatatcttgaaacgttaaatctagaaggatgtacacaactcaggaagatagatccattcattggtcttctaagaaagcttacaattttaaatttaaaagattgcaAAAATCTATTATTTGATGAACCAAGGGATGATGAGATTTCGGAGAAGCTTTGTATAGGTGAAGCTCCTACTCAATCCCAATCAACATCCTCCATTTTGAAAAGGTTGTTTTCGAGGCCTTTACATTTGGTGTATGCCAAAGCACATAAAGATTCAGTTAGTCGTTTATTGTTTTCCTTGCCTATTTTCTCATGTATGCGTGAACTTGATCTAAGTTTTTGCAATTTACATAAAATCCCTGGTGCTTTTGGAAATTTACATTGCTTAGAATGCCTAGATTTAATGGGAAACAACTTTTCTACTCTGCCTTGTCTCAAGGAGCTTTCCAAACTGTTAGCTTTAAACTTACAGCACTGCAAGCGATTGAAATATTTGCCTGAGCTCCCTTCACGAACTTATTTTCCATCACGAACCTACATGCCGCCATGGTCAATTAGAGAAAATTTACTTGATGATGACACAAAATTTGGATTATATATTTTTAACTGTCCAGAATTAATTGAGGGAACGCTGCACTGGCATCGGTTTATCATGGATGATACAAATTGTTTAGCTACAGGCATTGAAAGTATCATTCCAGGAAGTGAAATACCAAGGTGGTTCAAAAATCAATATAATGGAAATAGTTGCATTGTTGTTGTCTGTAGTGCAATATTCGTGGTACTTAATAAAAGGCGAATGGACCATTTTTCATTGAAATATGTAATTACTGGGGTACGACTTATCTTGCATATCATGAGAAATTATACAATCTACAAGCAAAGGATCAATATGGAAAGGCTTTCATTTGAACGACAAGTAGAGATTGGTGGAAAGAATCTGACCATCGTTGAAAAGA 2488 0.3308 MASNTIIQCNPSTYTKRKYDVFVSFRGEDSHNNSTGFLFEALRKKGIDVFRDDVSLNKGKSIAPKLLQAIEGSRLFIVVFSKNYASSTWCLRELAHICNCIEISPRHVLPIFYDVGPSEVRKQSGSYEKPLPNTKKDLATTICREIEEIVQNILKILGPKFSSLPNDHLVGMEYRVEVLVKLLELELFNVVRVVRISGMCGIGKTTLDCALYERISHHYDFCCFIDDVKKIYQDSGALCIRCTKQLLSQFLNEENLEICNVYEGTCLVWSSLRNARTLIVIDHVDKVGQLMMFTGRRETLLRECLGGGSRLFCINVFKSNYIKSGYEELMKGVLSHVEGHPLAIDRNIACFFADYDEDYVKEIIDFCRFHPENGLRVLVDKSLISIEFGKIYMHGLLRDLRRYIVREESPKEPRKWNRLWDYKDLHEVMLDNKPHKLVEMSLPDSNMKQLWEDTKPQHNLRHLDISHSKNLIKIPNLGEAINLEHLNLKGCTQLGKIDPSIDCTSLIKLQFFGEALYLETLNLEGCTQLRKIDPFIGLLRKLTILNLKDCKNLLFDEPRDDEISEKLCIGEAPTQSQSTSSILKRLFSRPLHLVYAKAHKDSVSRLLFSLPIFSCMRELDLSFCNLHKIPGAFGNLHCLECLDLMGNNFSTLPCLKELSKLLALNLQHCKRLKYLPELPSRTYFPSRTYMPPWSIRENLLDDDTKFGLYIFNCPELIEGTLHWHRFIMDDTNCLATGIESIIPGSEIPRWFKNQYNGNSCIVVVCSAIFVVLNKRRMDHFSLKYVITGVRLILHIMRNYTIYKQRINMERLSFERQVEIGGKNLTIVEK 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01248 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 381 IPR027417 -
Gma12g01248 829 Gene3D - 3 156 IPR035897 -
Gma12g01248 829 PRINTS Disease resistance protein signature 656 672 - -
Gma12g01248 829 PRINTS Disease resistance protein signature 193 208 - -
Gma12g01248 829 PRINTS Disease resistance protein signature 271 285 - -
Gma12g01248 829 Gene3D Ribonuclease Inhibitor 571 685 IPR032675 -
Gma12g01248 829 Gene3D Ribonuclease Inhibitor 415 559 IPR032675 -
Gma12g01248 829 ProSiteProfiles TIR domain profile. 17 157 IPR000157 GO:0007165
Gma12g01248 829 SMART till_3 18 160 IPR000157 GO:0007165
Gma12g01248 829 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 157 IPR035897 -
Gma12g01248 829 ProSiteProfiles Leucine-rich repeat profile. 638 659 IPR001611 GO:0005515
Gma12g01248 829 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 131 IPR044974 GO:0006952
Gma12g01248 829 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 146 310 IPR044974 GO:0006952
Gma12g01248 829 Gene3D - 160 306 IPR027417 -
Gma12g01248 829 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 435 504 - -
Gma12g01248 829 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 347 433 - -
Gma12g01248 829 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 131 - -
Gma12g01248 829 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 146 310 - -
Gma12g01248 829 SUPERFAMILY L domain-like 393 677 - -
Gma12g01248 829 Pfam TIR domain 18 138 IPR000157 GO:0007165
Gma12g01248 829 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 435 504 IPR044974 GO:0006952
Gma12g01248 829 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 347 433 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01248 Gma-Chr12 16723337 16728099 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01248 175 679 WRKY Transcription Factor Family AT5G45050 24.885 2.00e-29 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01248 - - gmx:100305456 555.444