Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01245 ATGGACTTGAATCAATTTTTAAATTTTAACGTTATTAGTTCGGAAGGATTCCCTTGCACATCGTCTTGTACTCCTATTTCACCAATATCCAACCAGTTGCTTGGATCCTTGAAACTTGACATAGGAAACTCACCTAACTCGGCCCTTTCTAGTCATTTTGATTCTGATACTCTTTCTTCTGCATTAAGTGACAGTCAGGAATTGCACACCTCTGGGGAAATTCACTCTGGTGTCAACTCTTGCAAGTCTTTGCAGGAAAGCAATCATTATTTGCACAGGCCAGTCTCATTTGTAGACCATCTCCAAGACGGTTTACATCTATCTACTAGGAGCTTTCTTCCACAGGATGCAAGTTATGACCATGAAACTAGACATGCATTGCTGGAATTAGAAACAGCTTTGATGGCACCTGATGGTGAAGATCAAATCACCACATCAAGCACTTCTTTGGGTGTTGGCAGTAGACCAACAACATCTTGCCAAAGAAATAGGTCCTGGAGCTCTGAGGGCCAGTCAAGTGATGTTGCACATGTAGAGAAGCACCACAAATCAGTGGAGGAAGAATCGCTGCAAGGATTTCCATCATGCAATTTGAAACAATTGCTGATTGTATGTGCCAAAGCCTTGTCTGAAAACAACATGCAACATTTTGATCAATTGATAGAAAAAGCTAGAAGTGCTGTGTCTATAACTGGGGAGCCAATCCAGCGCCTTGGTGCTTATTTGGTAGAAGGGCTTGTTGCAAGGAAGGAGGCATCAGGAAATAACATCTACCATGCCCTAAGATGCAGAGAGCCTGAGGGAAAAGATTTACTCTCTTACATGCAGCTACTGTATGAAATCTGTCCCTACTTAAAATTTGGTTACATGGCTGCCAATGGCGCTATTGCTGAAGCATGTAGGAATGAGGACCAAATTCATATCATAGACTTTCAGATTGGTCAGGGAACTCAATGGGTGACACTTCTTCAAGCTCTTGCAGCAAGACCTGGTGGAGCTCCCCATGTGCGGATCACAGGGATTGACGATCCCCTTTCTAAATATGTTCGTGGTGATGGACTGGAAGCTGTTGGGAAAAGGTTGGCTGCGATATCTCAGACATTTAACATCCGAGTTGAGTTCCACGGCGTGCCTGTTTTAGCTCCAGATGTGACAAAAGACGTGCTTGATGTTAGGCCTGGTGAGGCTTTGGCTGTGAACTTCCCTTTGCAACTCCATCATACAGCTGATGAAAGTGTTGATATGAGTAATCCAAGGGATGGACTTTTGAGATTGGTGAAATCACTTTCTCCCAAGGTAACTACATTGGTTGAGCAAGAGTCAAACACAAATACCACTCCTTTCTTCAACAGGTTTATAGAAACCTTGGATTACTACTTGGCAATGTTTGAGTCCATTGATGTGTCTCTTCCGAGAAAGAGCAAGGTGCAGATTAATATGGAGCAACATTGTTTGGCTCGGGATATTGTCAACATTATTGCTTGTGAAGGGAAGGAAAGGGTAGAGAGACATGAGCTGTTAGGCAAGTGGAAGTCTAGGTTAACAATGGCTGGCTTTCGTCAATATCCTTTGAGTTCTTATATGAATTCTGTCATAAGAAGCCTGCTGAGGTGCTATTCAAAACATTATAATCTTGTGGAGAAGGATGGGGCCATGCTACTGGGATGGAAGGACAGAAATTTGATTTCAACTTCAGCTTGGTATTGA 1707 0.4288 MDLNQFLNFNVISSEGFPCTSSCTPISPISNQLLGSLKLDIGNSPNSALSSHFDSDTLSSALSDSQELHTSGEIHSGVNSCKSLQESNHYLHRPVSFVDHLQDGLHLSTRSFLPQDASYDHETRHALLELETALMAPDGEDQITTSSTSLGVGSRPTTSCQRNRSWSSEGQSSDVAHVEKHHKSVEEESLQGFPSCNLKQLLIVCAKALSENNMQHFDQLIEKARSAVSITGEPIQRLGAYLVEGLVARKEASGNNIYHALRCREPEGKDLLSYMQLLYEICPYLKFGYMAANGAIAEACRNEDQIHIIDFQIGQGTQWVTLLQALAARPGGAPHVRITGIDDPLSKYVRGDGLEAVGKRLAAISQTFNIRVEFHGVPVLAPDVTKDVLDVRPGEALAVNFPLQLHHTADESVDMSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAMFESIDVSLPRKSKVQINMEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFRQYPLSSYMNSVIRSLLRCYSKHYNLVEKDGAMLLGWKDRNLISTSAWY 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01245 568 MobiDBLite consensus disorder prediction 138 181 - -
Gma12g01245 568 ProSiteProfiles GRAS family profile. 189 568 IPR005202 -
Gma12g01245 568 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 22 568 IPR005202 -
Gma12g01245 568 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 22 568 - -
Gma12g01245 568 Pfam GRAS domain family 198 567 IPR005202 -
Gma12g01245 568 MobiDBLite consensus disorder prediction 139 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01245 Gma-Chr12 16622337 16626006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01245 121 567 GRAS Transcription Factor Family AT5G48150 56.473 1.00e-176 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma12g01245 GRAS 3.7e-127 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01245 - - gmx:100797644 1124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01245 12 16622337 16626006 Gma12g01245 12 16622337 16626006 ECH
Gma12g01245 12 16622337 16626006 Gma06g02450 06 46785426 46788692 GST
Gma13g02520 13 40115548 40117281 Gma12g01245 12 16622337 16626006 PCT
Gma12g02038 12 40991046 40992761 Gma12g01245 12 16622337 16626006 PCT
Gma12g01245 12 16622337 16626006 Gma13g02520 13 40115548 40117281 PCT
Gma12g01245 12 16622337 16626006 Gma12g02038 12 40991046 40992761 PCT