Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01243 ATGGTTCCGTTTGGGAAAGCAGCGTTCTTCCCAAGTTGTTTGATTCACACCAATGAGTTCCTGGTTCTTTTAGGAGAAGGATATTATGATGAGAGAACTTCGAAGCAAACCGTTGAGATTTTACAGCGAAGAGGGAAGTCCTTGGATTCGCGGGTTGATTCTCTTGAGGTCAATATCAAGGACCTTGAAGCAGAGGCTTCATTTCTCAATGCCACGGCTTCATTTTTGACAACTAGGATTATGGTAGGACTACCATCTTTGGAGAACAGGGAAAAGATTTTGAGGAATCTTTTGGCAAAAGAAAAGGTGGACAACGAAGTTGAGTTTAAGGAACTTGCAACTATGACAGAAGGATATACTGGAAGTGATCTAAAGAACTTGTGCACAAATGCTACTTATCGGCCTGTGAAAGAGCTAATTTAG 423 0.4137 MVPFGKAAFFPSCLIHTNEFLVLLGEGYYDERTSKQTVEILQRRGKSLDSRVDSLEVNIKDLEAEASFLNATASFLTTRIMVGLPSLENREKILRNLLAKEKVDNEVEFKELATMTEGYTGSDLKNLCTNATYRPVKELI 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01243 140 PANTHER UNCONVENTIONAL PREFOLDIN RPB5 INTERACTOR 1 1 74 - -
Gma12g01243 140 Coils Coil 45 79 - -
Gma12g01243 140 Gene3D - 1 81 IPR009053 -
Gma12g01243 140 SUPERFAMILY Prefoldin 1 70 - -
Gma12g01243 140 Pfam Prefoldin subunit 1 74 IPR004127 -
Gma12g01243 140 PANTHER RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN NNX3 1 74 - -
Gma12g01243 140 Pfam AAA+ lid domain 107 139 IPR041569 -
Gma12g01243 140 Gene3D - 83 140 - -
Gma12g01243 140 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 137 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01243 Gma-Chr12 16589915 16591308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01243 80 138 Calmodulin-binding Proteins AT3G56690 37.288 9.46e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01243 K17560 - gmx:100781544 138.272