Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01237 ATGAGAGAGGAGTCACTTGGACTGATTATTGGGGTTTCCATAGGTGTGGTTATTGGACTAGTTTTGGCAATTTTTGCGTTCTTCTGCCACAGGTACCATCGAAAGCGATCACAGATAGGCAATAGCAGTTCTAGAAGGGCTGCTACCATACCTATCCTCACAAATGGTGCTGATTCTTGTACCATTCTATCAGACTCAACCTTAGGTCCAGAATCACCGATAAAGTCCGGAAGAAATGGTATGCCCTTCTGGCTTGATGGGTTTAAGAAGAGTAGTAGCATGATCCCAGCGTCTGGACTACCTGAATATGCATACAAGGATTTGCAGAAGGCAACACATAATTTCACCACGGTCATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTCTACTGGTGAGACTGTTGCAGTTAAAGTTCTTGCAATGAATTCTAAGCAAGGGGAGAAAGAATTTCACACAGAGGTCATGTTGTTGGGAAGGTTACACCATAGGAATCTGGTGAATTTGGTTGGATATAGTGCTGAAAAGGGGCAACGTATGCTTGTATATGTATACATGAGTAACGGTAGCTTGGCATCCCACTTGTATAGTGATGTGAATGAAGCACTGTGCTGGGATTTGAGGGTTCACATAGCTTTAGATGTGGCACGAGGCTTGGAATATCTTCATAATGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAACATTCTGTTGGATCAATCCATGCTAGCCAGGGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGCGAATAAGCATGCAGCTATTCGGGGTACCTTTGGCTATCTTGACCCCGAGTATATATCTTCAGGAACATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTGTTGCTCTTTGAAATTATGGCTGGCAGGAATCCTCAGCAGGGTCTTATGGAATACGTAGAGCTTGCAGCAATGAACACTGAGGGAAAAGTTGGGTGGGAAGAAATTGTGGATTCTCACCTCCAAGGAAACTTTGATGTCAAGGAACTCAATAAAGTGGCAGCACTTGCCTACAAATGCATCAACCGTGCCCCAAGTAACCGTCCTTCTATGAGGGACATAGTGCAAGTGTTAACAAGGATCCTTAAATCAAGGCACCATGGGAGTCATCACAAAAATTCCTTGTCAGCCACAGATGAAGTTTTCATTGATACTGATCAGCTAGAGACCAAGATTTCTGTTACTGACCACAGGAGAGAAGAGTCTATGGATAGTGTAGCAGAGGTGTATGAAGTGTAG 1290 0.4357 MREESLGLIIGVSIGVVIGLVLAIFAFFCHRYHRKRSQIGNSSSRRAATIPILTNGADSCTILSDSTLGPESPIKSGRNGMPFWLDGFKKSSSMIPASGLPEYAYKDLQKATHNFTTVIGQGAFGPVYKAQMSTGETVAVKVLAMNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYSAEKGQRMLVYVYMSNGSLASHLYSDVNEALCWDLRVHIALDVARGLEYLHNGAVPPVIHRDIKSSNILLDQSMLARVADFGLSREEMANKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFEIMAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSHLQGNFDVKELNKVAALAYKCINRAPSNRPSMRDIVQVLTRILKSRHHGSHHKNSLSATDEVFIDTDQLETKISVTDHRREESMDSVAEVYEV 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01237 429 Pfam Protein tyrosine and serine/threonine kinase 115 375 IPR001245 GO:0004672|GO:0006468
Gma12g01237 429 Gene3D Phosphorylase Kinase; domain 1 86 188 - -
Gma12g01237 429 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 8 403 - -
Gma12g01237 429 SUPERFAMILY Protein kinase-like (PK-like) 89 375 IPR011009 -
Gma12g01237 429 SMART serkin_6 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g01237 429 CDD STKc_IRAK 119 378 - -
Gma12g01237 429 Gene3D Transferase(Phosphotransferase) domain 1 189 402 - -
Gma12g01237 429 PANTHER OS01G0253100 PROTEIN 8 403 IPR045271 GO:0004714|GO:0006468
Gma12g01237 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Gma12g01237 429 ProSiteProfiles Protein kinase domain profile. 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01237 Gma-Chr12 16509929 16513793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01237 99 385 Receptor kinase-like Gene Family AT3G19300 42.662 1.49e-72 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Gma12g01237 PK_Tyr_Ser-Thr 3.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01237 - - gmx:100785634 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01237 12 16509929 16513793 Gma12g01237 12 16509929 16513793 ECH
Gma12g01237 12 16509929 16513793 Gma06g02451 06 46802924 46807364 GST
Gma13g02522 13 40137873 40142611 Gma12g01237 12 16509929 16513793 PCT
Gma12g02035 12 40972215 40975912 Gma12g01237 12 16509929 16513793 PCT
Gma12g01237 12 16509929 16513793 Gma13g02522 13 40137873 40142611 PCT
Gma12g01237 12 16509929 16513793 Gma12g02035 12 40972215 40975912 PCT