Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01235 ATGGAGAAAGTAGAAGAGAAAAAGAAGATAAAGGGAAACATTAAGGATAACATGCCAACAGTGTGGTTCTCTCTGAAGAAGTCCTTACACTGCAAATCTGAGCCATCTGATGTTCATGACCCCAAAACAAGGAAGCAGTTGAGCACAATCTTGACAAAGAGAGCAGGGAGGTCAGGGTGTTCAAGGTCCATAGCAAATCTCAAAGATGTAATCCATGGAAGCAAGAGGCATCTTGATAAGCCACCAAGTTGCAGTCCAAGATCCATAGGGAGCAGTGAGTTCCTCAACCCCATAACTCATGAGGTGATTCTGAGCAACTCAAGGTGTGAGCTGAAGATAACTGGCTATGGAGGGTTCCAAGAAGGGGTTGGAAGTGGTGGTAGCAATGCTGGAGGAGGTGGTATTGGTGGTTCTACTTTTGTGGGGACTTTGAGGCCTGGTACTCCAGGCCCTGGAGGGCACCCTACAATGCACTACTTTAACCCTTCTTTTAGGACTTCATCCACTCCTCCAAGGAAATCTCCTTTCCTATCAGATAAAGAAGGGTCTGGTCCTCATGGTGCTGGACTTCATCCTAGCAATAGGTTGTCTCTTGAGACAGATTCTAATGGCTCTTCAACTGTGACTTGCCACAAATGTGGAGAGCAATTTAACAAATGGGATGCTGCTGAAGCTCATCATCTGTCCAAGCATGCTGTGACTGAACTTGTGGAAGGAGATTCTTCAAGGAAAATAGTGGAGATCATATGCAGGACTAGCTGGTTAAAGGAGACAGTGAAGATCAAGGCCAGCAAACTCCAGAAGAAGCATCCAAGATGTCTTGCTGATGGGAATGAACTTCTGAGGTTCTATGGCACCTCTGTTTCATGCTCTCTTGGTCTCAATGGCTCTTCTACCCTCTGCCTATCAGAAAAGTGTTGTGTTTGCAGAATCATAAGGAATGGATTTTCAGCCAAGAAGGAGCTCAAGGGTGGTATTGGAGTCTTCACAACATCTACAAGTGGAAGGGCTTTTGAGTCCATAGAAATCATTGGTGAGGAACCATCACTGAGAAAAGCACTTATAGTGTGCAGAGTAATTGCTGGAAGGGTTCATAGGCCACTAGAAAACATTCAGGAAATGGCAGCACAAACAGGATTTGATTCATTGGCTGGGAAAGTTGGTCTCTATTCAAACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTGATTTGCAAACCTTGA 1245 0.4482 MEKVEEKKKIKGNIKDNMPTVWFSLKKSLHCKSEPSDVHDPKTRKQLSTILTKRAGRSGCSRSIANLKDVIHGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGVGSGGSNAGGGGIGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLSDKEGSGPHGAGLHPSNRLSLETDSNGSSTVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKETVKIKASKLQKKHPRCLADGNELLRFYGTSVSCSLGLNGSSTLCLSEKCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFESIEIIGEEPSLRKALIVCRVIAGRVHRPLENIQEMAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01235 414 PANTHER - 256 414 - -
Gma12g01235 414 SUPERFAMILY ADP-ribosylation 233 413 - -
Gma12g01235 414 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 256 414 - -
Gma12g01235 414 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 19 256 - -
Gma12g01235 414 MobiDBLite consensus disorder prediction 137 202 - -
Gma12g01235 414 ProSitePatterns Zinc finger C2H2 type domain signature. 210 231 IPR013087 -
Gma12g01235 414 Gene3D - 214 413 - -
Gma12g01235 414 MobiDBLite consensus disorder prediction 160 174 - -
Gma12g01235 414 PANTHER - 19 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01235 Gma-Chr12 16482416 16484299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01235 18 414 C2H2 Transcription Factor Family AT5G54630 62.826 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma12g01235 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01235 - - gmx:100785097 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01235 12 16482416 16484299 Gma12g01235 12 16482416 16484299 ECH
Gma12g01235 12 16482416 16484299 Gma06g02453 06 46827367 46829975 GST