Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01234 ATGGGGATTAAAAAATATATGGTTAACATAAAGGTTAGGTTTGCGGTTCTTTTGGTTCTTCTTCTTGTAGCAGCAGTCAGCCCTTCGGAAAAGAAGCAAACAGAAGATGATTTGGTTAGGGAGTTACTTGATCCAGCATCTGGATTGTTAGATGAGCATACGGAATTGTCCGGCAGCACCAATATAATCAGTTCTGAGAATCAACCAATATCACAGCCTGCACAGGAAGAAATACAAAAAATTATCAAGTCTTACTGTTCTCAATTCAAGGAGAACTTTCTTCACTGTTTGAGAAAAAATAATCGTCCATATCCTGTCTCAAGAAAAGAGGATGATTCCAAGATTTGGCATGTCACTTATATGGGACCACTTTTTTCCCGATCCAGTGATCCTGAAAGAAAATTTGGTCGTATTTTGCTCCAGCACATATCAGAACCGCCAAGTCCAGGCCCTGCAGTTGGATCACCTTCacccagtttaacaccatctcctgaacccagtctagcaccatcatctgaacctagtctggccccatcaCCCTTTGCTCCAACGCCTCTAGTTCATAGACCTCTGCATAATTCTTTGCCACCAACATCATTTTTCCCAAAATTGACACCACCAGCAGCTTCAGAAATTTCTGCTCCTCCACCTTCTGACATTAACAAACAGGAAGAGAAGCATAGTAATAAAAAAACAGTTGTTCTCGCTGTAGTTATAACTGCATTAGTGACATTTATAGCTGCAGCAGTGCTCTTTTTATGCTGTACTCGGTATCGTAAGACTGGCCATGTTAGACTAAATGATGATAGACCTCTTCTCAGCTTGAGCATGAGTGACTACTCTGTTGGTCCTTCCAGTTattcttttggaaattcaatgaaaggggagaaagttgggtttcagtcatcaagTAATAGTTTAGTAGACAATAAGAAGTACTCAGTGCAGGAAAGTCAATCAATAGGAGCTCTTAATGCTGCTGCGGGATCACCATTTGAACTGAAACCTCCTCTCGGGAGGGTTCCCACCATCCCTTCTGGAATGCCTCCTTTAAAACCTCCTCCAGGCAGGCTAAACCCTCTTCCTCCTGAGCCACCTTCATTTAGGCCTTCTGGTGATGCTGCTCCAGCTGCTACTGCCGCTGTTGCTGCAGCTTCTCCTGCCCCTCAACAGCCTGCTATTAGTAGCActccaccaccaccccgaccaccagctggtgccaaacctggcccacccctaccactaccgccagcactagctggtgccagacctggtcctcctccaccacctccagcctcagttggtgccaaacctggtcctcctccaccaccacccccaggaccagctggtgccaaacctggtccacctcctccaccacccccagctggtgccaaacctggttctcgtccaccaccaccTCCTCCTATGAGTGGTGTGGCTCCTCCTCGACCTCCGCCCCCGTTTGGTTCAAAGGTGCAACGTCCCTTAGCTAGTGGATCAAAAGCTACAGTTGAAGCTGGAGTAGAAGGTGAAGCTGATGCTCCCAAAGCCAAGCTAAAGCCCTTCTTCTGGGATAAGGTTCAAGCAAACCCAGATCAATCAATGGTTTGGAATCAAATCAAATCAGGATCATTCCAGTTTAACGAAGAGATGATAGAGACGCTTTTTGGCTATAATGCCGTGGATAAGAACAATGGTCAAAAACAGAAACAGTCTTCCTCCCAAGATCCTTCACCACTGTTTATCCAGATCATTGACAAAAAGAAAGCACAAAATTTATTGATTCTGTTGCGAGCATTGAATGTGACAATGGAAGAAGTTTGTGATGCACTTTATGAAGGACATGAGCTTCCCCCGGAATTCCTTCAAACCTTGCTGAAGATGGCACCGACATCAGATGAAGAACTTAAGCTTAGACTTTTTAGTGGTGATCTATCTCAACTTGGACCTGCTGACCGTTTCCTGAAAGCCATGGTTGACATTCCATTTGCATTTAAGCGAATGGAATTTCTGCTTTTCATGGGCTCACTTAAAGAGGAGCTTGCAACCATTATGGAGTCTTTTGCCATTTTAGAGGTTGCTTGTAAGGAACTAAGAAACAGCCGGCTGTTCCTCAAGCTTCTTGAAGCTGTTCTCAAAACTGGCAACCGAATGAATGATGGAACATTCCGTGGTGGTGCACAAGCATTTAAACTTGATACACTTCTGAAATTATCTGATGTAAAAGGAACAGATGGCAAGACTACACTCTTACATTTTGTTGTTCTAGAGATTATCCGCTCCGAGGGCATAAAAGCCATCCGAAAGGCAAAAGAGAGCCAGAGCTCGTCTAGTATTAAATCAGATGGCCTTCCTGATAGTACCCAAGAAACAGAAGATTACTACCATGAAATTGGTCTTCAGGTGGTTTCACGCTTGAGCAGTGAACTTGAGAATGTGAAAAAAGCAGCAGTTATAGATGCTGACAGCTTAACAGGAACCACTGCCAAACTTGGCTATGGTCTCATAAAAACACGAGACTTGGTAACAAAAACCATGAAGAATGTGGAGGAAGATAGGGGGTTTTTTGAGACGGTGAAAAGTTTTGTGCAGAATGCTGAGGCTGATGTTACAAAGCTGCTGGAAGAGGAGAAGAAAATAATGACTTTGGTGAAGAGCACTGGTGATTATTTCCATGGGAATGCTGGGAAGGATGACGGCATAAGGTTGTTCATAGTAGTACGAGACTTCTTAATAATGGTGGATAAGGTATGCAAGGAGGTGAGAGATACACGGAAGAAGCTGGCAAAAACTCTAAAACAAGAGACTCCTAGAGGAGCATCTTCATCTGAAACACGTCCACCACCTGATTTTCGTCAGCGGCTTTTTCCAGCAATTGCTGAAAGGAGGATGGATGACATTAGTTCAGACGACGAGAGTCCATAG 2925 0.3798 MGIKKYMVNIKVRFAVLLVLLLVAAVSPSEKKQTEDDLVRELLDPASGLLDEHTELSGSTNIISSENQPISQPAQEEIQKIIKSYCSQFKENFLHCLRKNNRPYPVSRKEDDSKIWHVTYMGPLFSRSSDPERKFGRILLQHISEPPSPGPAVGSPSPSLTPSPEPSLAPSSEPSLAPSPFAPTPLVHRPLHNSLPPTSFFPKLTPPAASEISAPPPSDINKQEEKHSNKKTVVLAVVITALVTFIAAAVLFLCCTRYRKTGHVRLNDDRPLLSLSMSDYSVGPSSYSFGNSMKGEKVGFQSSSNSLVDNKKYSVQESQSIGALNAAAGSPFELKPPLGRVPTIPSGMPPLKPPPGRLNPLPPEPPSFRPSGDAAPAATAAVAAASPAPQQPAISSTPPPPRPPAGAKPGPPLPLPPALAGARPGPPPPPPASVGAKPGPPPPPPPGPAGAKPGPPPPPPPAGAKPGSRPPPPPPMSGVAPPRPPPPFGSKVQRPLASGSKATVEAGVEGEADAPKAKLKPFFWDKVQANPDQSMVWNQIKSGSFQFNEEMIETLFGYNAVDKNNGQKQKQSSSQDPSPLFIQIIDKKKAQNLLILLRALNVTMEEVCDALYEGHELPPEFLQTLLKMAPTSDEELKLRLFSGDLSQLGPADRFLKAMVDIPFAFKRMEFLLFMGSLKEELATIMESFAILEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGIKAIRKAKESQSSSSIKSDGLPDSTQETEDYYHEIGLQVVSRLSSELENVKKAAVIDADSLTGTTAKLGYGLIKTRDLVTKTMKNVEEDRGFFETVKSFVQNAEADVTKLLEEEKKIMTLVKSTGDYFHGNAGKDDGIRLFIVVRDFLIMVDKVCKEVRDTRKKLAKTLKQETPRGASSSETRPPPDFRQRLFPAIAERRMDDISSDDESP 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01234 974 MobiDBLite consensus disorder prediction 956 974 - -
Gma12g01234 974 SUPERFAMILY Formin homology 2 domain (FH2 domain) 581 941 - -
Gma12g01234 974 MobiDBLite consensus disorder prediction 147 177 - -
Gma12g01234 974 Gene3D Formin, FH2 domain 514 946 IPR042201 -
Gma12g01234 974 MobiDBLite consensus disorder prediction 929 974 - -
Gma12g01234 974 MobiDBLite consensus disorder prediction 369 513 - -
Gma12g01234 974 MobiDBLite consensus disorder prediction 392 491 - -
Gma12g01234 974 PANTHER FORMIN-RELATED 1 972 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Gma12g01234 974 Pfam Formin Homology 2 Domain 511 914 IPR015425 -
Gma12g01234 974 PANTHER FORMIN-LIKE PROTEIN 1 972 - -
Gma12g01234 974 MobiDBLite consensus disorder prediction 149 177 - -
Gma12g01234 974 ProSiteProfiles Formin homology-2 (FH2) domain profile. 509 940 IPR015425 -
Gma12g01234 974 SMART it6_source 509 929 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01234 Gma-Chr12 16432811 16440147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01234 513 965 FH2 protein (formin) Gene Family AT5G54650 66.812 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01234 - - gmx:100793413 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01234 12 16432811 16440147 Gma12g01234 12 16432811 16440147 ECH
Gma12g01234 12 16432811 16440147 Gma06g02454 06 46843956 46851031 GST
Gma13g02528 13 40174931 40179341 Gma12g01234 12 16432811 16440147 PCT
Gma12g02029 12 40926338 40930840 Gma12g01234 12 16432811 16440147 PCT
Gma12g01234 12 16432811 16440147 Gma13g02528 13 40174931 40179341 PCT
Gma12g01234 12 16432811 16440147 Gma12g02029 12 40926338 40930840 PCT