Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01230 ATGGTTTCCCGGGAAAATACCAATTGGCTCTTCGATTACGGCTTGATCGACGATATTCCCGTTCCGGATGCCACCTTTGGCGTCAATTCCTCCGCCTTCACATGGCCCCCTAACGCCCTCGACGCTCCTTCCAATGTCGGTGTTGACATTGATGGCTCATTGGGGGATTCTGACGGTCTCAAAGAGTCTGGCTCAAAGAAAAGAGTTAGGTCTGAATCATGTGCTGCTTCTAGCTCCAAGGCATGTCGAGAGAAGTTGCGAAGAGATAGGCTTAATGACAAGTTTGTTGAATTGGGCTCCATTTTGGAGCCTGGAAGGCCTGCCAAAACGGACAAGACTGCTATCCTGATTGATGCTGTCCGAATGGTGACCCAATTAAGGGGTGAAGCCCAGAAGTTGAAAGACACTAATCAGGGTCTTCAAGAAAAGATTAAAGATTTGAAGGCTGAGAAGAATGAACTTCGCGATCAGAAACAGAGGCTCAAGGCAGAGAAGGAGAAGCTGGAGCAGCAGCTGAAATCATTGAATGGACAGCCTAGTTTCATGCCTCCCCCTGCTGCAATCCCTGCTGCATTTGCGGTGCAAGGCCAAGCCCACGGCAACAAGTTGGTACCTTTTATTAGCTATCCAGGAGTTGCAATGTGGCAATTCATGCCACCTGCTGCAGTGGATACCTCACAGGATCATGTTCTCCGACCACCAGTTGCCTAA 711 0.4937 MVSRENTNWLFDYGLIDDIPVPDATFGVNSSAFTWPPNALDAPSNVGVDIDGSLGDSDGLKESGSKKRVRSESCAASSSKACREKLRRDRLNDKFVELGSILEPGRPAKTDKTAILIDAVRMVTQLRGEAQKLKDTNQGLQEKIKDLKAEKNELRDQKQRLKAEKEKLEQQLKSLNGQPSFMPPPAAIPAAFAVQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01230 236 SMART finulus 81 132 IPR011598 GO:0046983
Gma12g01230 236 CDD bHLH_AtILR3_like 80 155 - -
Gma12g01230 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Gma12g01230 236 Coils Coil 123 178 - -
Gma12g01230 236 PANTHER BHLH TRANSCRIPTION FACTOR 1 236 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Gma12g01230 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 144 IPR036638 GO:0046983
Gma12g01230 236 MobiDBLite consensus disorder prediction 51 72 - -
Gma12g01230 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Gma12g01230 236 Gene3D - 78 156 IPR036638 GO:0046983
Gma12g01230 236 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01230 Gma-Chr12 16211401 16214776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01230 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 68.201 6.49e-110 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma12g01230 HLH 3.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01230 - - gmx:100783689 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01230 12 16211401 16214776 Gma12g01230 12 16211401 16214776 ECH
Gma12g01230 12 16211401 16214776 Gma06g02458 06 46923207 46927656 GST
Gma13g02533 13 40207583 40210186 Gma12g01230 12 16211401 16214776 PCT
Gma12g02024 12 40896762 40898656 Gma12g01230 12 16211401 16214776 PCT
Gma12g01230 12 16211401 16214776 Gma13g02533 13 40207583 40210186 PCT
Gma12g01230 12 16211401 16214776 Gma12g02024 12 40896762 40898656 PCT