Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01197 ATGGCCTGTAATAGCATCCAAAGTAGCTCTTCACTATGCACAAGAAATTTtgatgtgtttctaagttttagaggtacagatactcacaatggtttcattgatcacctttttgcaagtcttccgaggaaaggtgttgctgccttcagagatgaccaaacaataaaaaagggaaactcttggagcctgggaatcttgcaggctatcgaaggattgcgcgtttacattgttgtcttctcaaaagactatgcattatccacatggtgcatgaaagagctagcaaagattgttgattgggttgaagaaacaggtcgtaAAATTGAAAAAATTGTTGAAGAGGTAATTAACATATTGAGTCATAATCAAATTTTGAGTTTGGGGGATGatttagttgatatgctttcttgtgtgaaacaaatggaagagtttctagatctagatgcaaataaagatattcgagttgtaggaatttgtgaaatggcaatcaaagtattgggatcatttttgtttgatagagacgtttctgaatggagaagtgcattgactagattgaaagaaaatccaagcaaagatatgatggatgttttacgaataatggatacttttgaggaagatgtgacggaacttctagcttactgtagattttatcctaacattgctatgaaagttctcattgagaaatcactcataagttgcactgagactaggatgattcaaattcatgatttgttgaaagagttggataagagcattgttcgagaaaaatcacccaaggagtcaagaaagtggagccgaatatgggactacaaggatttcCAAAATGCCACGATAGAAAATATGGAAGCCGAAATTCTTGAAGCCATAGTTGTTAAACAATATCCAAAAGAGTCAATGGAAAAAGTATTGAATGTTGATGCTATAtcaaaaatgaatcatcataagttgctcatacttgagaatgtgacttttttaggaactctcaattatgtttctaataaattaagatatctatcttgggatagatatcctttcaagtctttattattaagttttcatctgaaacaacttgtagaattgttccttccatgtagcaatatcaaacaattgtggGAAGCTACAAAGTGTTTGCCTAATTTGAGAACTCTAGATCTCAGACACTCCAAAAATCTTAGTCAGATGCCAAACATGAGAGGTGTCCCCCATTTTGAGAAACTTACTTTTGAAGGATGTATAAAAATTGACCAGATTGATCCATCCATTAGTATTCTAATAGAGCATACTTTGTTGAATCTGAAAAATTGTAAGAATCTTGTCCTTAATCTGAATATCATTTTTGGGCTCAATTCTCTTCAGGTGCTAGAGCTCTCAGGCTGTTCCAAAATACTTAACAATCAGTTC 1395 0.1254 MACNSIQSSSSLCTRNFDVFLSFRGTDTHNGFIDHLFASLPRKGVAAFRDDQTIKKGNSWSLGILQAIEGLRVYIVVFSKDYALSTWCMKELAKIVDWVEETGRKIEKIVEEVINILSHNQILSLGDDLVDMLSCVKQMEEFLDLDANKDIRVVGICEMAIKVLGSFLFDRDVSEWRSALTRLKENPSKDMMDVLRIMDTFEEDVTELLAYCRFYPNIAMKVLIEKSLISCTETRMIQIHDLLKELDKSIVREKSPKESRKWSRIWDYKDFQNATIENMEAEILEAIVVKQYPKESMEKVLNVDAISKMNHHKLLILENVTFLGTLNYVSNKLRYLSWDRYPFKSLLLSFHLKQLVELFLPCSNIKQLWEATKCLPNLRTLDLRHSKNLSQMPNMRGVPHFEKLTFEGCIKIDQIDPSISILIEHTLLNLKNCKNLVLNLNIIFGLNSLQVLELSGCSKILNNQF 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01197 465 Pfam Leucine Rich Repeat 354 373 IPR011713 -
Gma12g01197 465 ProSiteProfiles TIR domain profile. 15 137 IPR000157 GO:0007165
Gma12g01197 465 SUPERFAMILY L domain-like 301 458 - -
Gma12g01197 465 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 159 460 IPR044974 GO:0006952
Gma12g01197 465 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 159 460 - -
Gma12g01197 465 Pfam TIR domain 16 135 IPR000157 GO:0007165
Gma12g01197 465 Gene3D Ribonuclease Inhibitor 238 464 IPR032675 -
Gma12g01197 465 Gene3D - 9 208 IPR035897 -
Gma12g01197 465 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 306 332 IPR001736 GO:0003824
Gma12g01197 465 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 115 IPR035897 -
Gma12g01197 465 SMART till_3 16 162 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01197 Gma-Chr12 15331555 15334032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01197 183 462 WRKY Transcription Factor Family AT4G12020 29.966 5.48e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01197 - - gmx:100819678 362.844