Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01187 ATGGCTTGTATTAGAATCCAAAGAGGCTCTTCATCACACACGAAGAATTTTgatgtgtttgtgagctttagaggtctggatactcgtaatagtttcactgatcatctttttgctgctcttcaaaggaaaggcatttttgctttcagggataaccaaaatatcaacaaaggggaactcttggagcctgagctcttgcaggcaatcgaaggatcacatgttttcattgttgtcttctcaaaagactatgcatcatccacatggtgcttgaaagagctgagaaagatttttgatggggttgaagaaacagggcgaagtgtactccctattttctatgatgtcactccttctgaggtccggaaacagagtggaaagtttggaaaagcttttgctgaacacgaagaaaggttcaaagatgaattggaaatggtaaaaaaatggagggaagctctcaaagcAATTGGCAATCGTAGTGGTTGGGATGTACAAAATAAGCCAGAACATGAAGAAATTGAAAAAATTGTTGAAGAAGTAATGAACCTACTGGGTCATAATCAAATTCATAGTCAAATTTGGAGTTTCTCTGGTGatttagttgatatggactctcgtgtgaaacaattggaagagcttctagatttgagcacaaatgatgttgttcgcgttgtgggaatttgggggatgagtggagtaggaaagacaacACTTGTTACTGCTTTGTTTGGTAAAATCTCTCCTCAATATGATGCTCGTTGTTTTATTGATGATTTAAACAAAAAATGTGGGAATTTTGGAGCAATAAGTGCACAAAAACAACTTCTTTCTCTAGCTCTACATCAAGGAAATATGGAGATACACAATCTTTCCCACGGAACCATGttgataagaactaggctatgtcacttaaagacacttattgttctggataatgttgatcaggttgaacaattagagaatttggctttgcatcgtgaatatttaggtgaagggagtagaatcatcataatctctacaaatatgcatatcttaagaaattatggagtagatggagtttacaatgttcaactccttaataaggataaggctcttcaattactttgcaaaaaagctttcaaatctgatgatattgtgaaagggtatgaagaggtaacacatgatgtactgaagtatgtcaatggccttccactagcaatcaaagtattgggctcatttttgtttgatcgacatgtttttgagtggagaagtgcattaactagaatgaaagaaaatccaagtaaagatatcatggatgtgttgcgaataagttttgatggattggagacaatggaaaaagaaatatttttagatattgcttgtttcttttcaagtgatcaattccggggttatgacgggtggtttgaaacttctaagaaaattctaggctatcgaggattttatcccgaaattggtatgaaggttcttgttgaaaaatcactcataagttatcatagggggaaaatttgtatgcatgacttgttgaaagagttgggcaagactattgttcgagaaaagacacccaaggaacctagaaagtggagtaggttatgggactacaaggatctcCAAAAAGTTATGATAGAAAATAAGGAAGCCAAAAATCTTGAAGCGATAGTTATTGATATTGAAAAATATCAAGAAGAGTTTCTACAACGAACAATGACAGTAGATGCTCTATCAAAACTGATTCATCTTAAATTACTCATGTTTAAGAATGTGAATTTTTCAGGAATCCTCAATTATCTTTCTAATGAAATGACGTATTTATATTGGAAAAACTATCCTTTCATGTCTTTGCCATCAAGCTTTCATCCGGATCAACTTGTAGAATTGATTCTACCTTATAGCAATATCAAAGAATTGTGGAAAGACACAAGGTATCTACCCAATTTGGAAATTCTAGATCTCAAATACTCCCAAAATCTTATTGAGATGCCAGACTTAAGTGGAGTCCCACATCTTAGGGATCTCGATCTCGAAGGATGTACAAAAATTGTACGCATCGATCCATCCATTGAGCACTGCAAGCAGCTGAAATATTTGCCCGAGCTTCCAACACCAAAAAAGAGAAAAAATCACAAATATTACGGGGAATTAAACACTTTCAATTGCCCCAATTTGAGTGAAATGGAACTTATTTATCGCATGGTTTTTTCTTGGATGACACAAATCTTTGAGGTACACTGGCAATCCTCTCTTTCCTTTAATAGGCTTAATATTGTTATTCCTGGAACTGAAATTCCAAGGTGGTTCAGTAAACAAAATGAGGGTGATTCAATAAGCATGGACCCGTCTCCTGTTATGGACAACCCAAATTGGATAGGTGTTGCCTGTTGTGCATTATTAGTGGCACTTCATGATCCGTCTAATATTGGTAATAGATGGAGAAATCTTCCTTTTGATTTTGGAAGTATGGGATTCAGTTTTCAAAATAAACAGGTTTTGAATAAAACATCTCGAGCACTTCCAATACATTTGCAGAATGATCTGGTTACAGGTGAATTAGATAACTTGCTGATTTTGTTTGCCTCTCGGGAAGGATTCCTTCTTTTTCCAAGTGAAGACGAAACTGATATGCATGGTCTTGATACAAGGGGATTCACAACTTCGATATATGACCACCCTAAAGGTTTGCGGATGCAGTTCCATCAAAGAAATTCTAATCCATTTGAGGGTTGTAGTACCAGAGCCAACAATTTCCAGGGCTTGGATGAATTCCAATATTCAAAGCAAAGTTACTGTGCATTTGGAATTGAATGGACATTACGGCAAGACCAATTCTATGGATTTTTACTTGGTCTTGACTCTTGA 2844 0.2032 MACIRIQRGSSSHTKNFDVFVSFRGLDTRNSFTDHLFAALQRKGIFAFRDNQNINKGELLEPELLQAIEGSHVFIVVFSKDYASSTWCLKELRKIFDGVEETGRSVLPIFYDVTPSEVRKQSGKFGKAFAEHEERFKDELEMVKKWREALKAIGNRSGWDVQNKPEHEEIEKIVEEVMNLLGHNQIHSQIWSFSGDLVDMDSRVKQLEELLDLSTNDVVRVVGIWGMSGVGKTTLVTALFGKISPQYDARCFIDDLNKKCGNFGAISAQKQLLSLALHQGNMEIHNLSHGTMLIRTRLCHLKTLIVLDNVDQVEQLENLALHREYLGEGSRIIIISTNMHILRNYGVDGVYNVQLLNKDKALQLLCKKAFKSDDIVKGYEEVTHDVLKYVNGLPLAIKVLGSFLFDRHVFEWRSALTRMKENPSKDIMDVLRISFDGLETMEKEIFLDIACFFSSDQFRGYDGWFETSKKILGYRGFYPEIGMKVLVEKSLISYHRGKICMHDLLKELGKTIVREKTPKEPRKWSRLWDYKDLQKVMIENKEAKNLEAIVIDIEKYQEEFLQRTMTVDALSKLIHLKLLMFKNVNFSGILNYLSNEMTYLYWKNYPFMSLPSSFHPDQLVELILPYSNIKELWKDTRYLPNLEILDLKYSQNLIEMPDLSGVPHLRDLDLEGCTKIVRIDPSIEHCKQLKYLPELPTPKKRKNHKYYGELNTFNCPNLSEMELIYRMVFSWMTQIFEVHWQSSLSFNRLNIVIPGTEIPRWFSKQNEGDSISMDPSPVMDNPNWIGVACCALLVALHDPSNIGNRWRNLPFDFGSMGFSFQNKQVLNKTSRALPIHLQNDLVTGELDNLLILFASREGFLLFPSEDETDMHGLDTRGFTTSIYDHPKGLRMQFHQRNSNPFEGCSTRANNFQGLDEFQYSKQSYCAFGIEWTLRQDQFYGFLLGLDS 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01187 947 Pfam Leucine Rich Repeat 618 636 IPR011713 -
Gma12g01187 947 SUPERFAMILY "Winged helix" DNA-binding domain 426 536 IPR036390 -
Gma12g01187 947 Gene3D - 10 185 IPR035897 -
Gma12g01187 947 Pfam C-JID domain 753 808 IPR045344 -
Gma12g01187 947 Gene3D - 186 349 IPR027417 -
Gma12g01187 947 Gene3D Ribonuclease Inhibitor 528 734 IPR032675 -
Gma12g01187 947 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 159 IPR035897 -
Gma12g01187 947 CDD ABC_ATPase 220 346 - -
Gma12g01187 947 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Gma12g01187 947 PRINTS Disease resistance protein signature 390 404 - -
Gma12g01187 947 PRINTS Disease resistance protein signature 297 311 - -
Gma12g01187 947 PRINTS Disease resistance protein signature 637 653 - -
Gma12g01187 947 PRINTS Disease resistance protein signature 221 236 - -
Gma12g01187 947 SUPERFAMILY L domain-like 565 754 - -
Gma12g01187 947 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 449 IPR027417 -
Gma12g01187 947 SMART till_3 16 156 IPR000157 GO:0007165
Gma12g01187 947 Gene3D - 355 439 IPR042197 -
Gma12g01187 947 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 692 IPR044974 GO:0006952
Gma12g01187 947 Pfam NB-ARC domain 204 425 IPR002182 GO:0043531
Gma12g01187 947 Pfam TIR domain 16 180 IPR000157 GO:0007165
Gma12g01187 947 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 14 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01187 Gma-Chr12 15201563 15206244 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01187 12 673 WRKY Transcription Factor Family AT4G12020 29.722 1.04e-71 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01187 - - gmx:100819678 1182.55