Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01186 ATGGCTTCCAACAGCATGGTCCCATGCAGCACTTCACCAGCGATGATAAAgaaatatgaagtgtttgtgagcttcagaggtaaggacacacgcaacaattttactgatcatctttttggtgctctccaaaggaagggcattcttacctttagggatgacacaaagctgaagaaaggggagcgtatactctctagcctcatgcaagcaattgaggggtctcagatttttgttattgtgttctcaaagaactatgcttcttcaacatggtgcttgcgagaacttgaaaagattcttgattgtgttagagtccccggaaaacgtgttcttcctattttttatgatgttgatccatctgaggttcgaaaacaaacgggagattacgggaaagccttcaccaaacacgaagagagattcaaagatgatgtagagaagatggaggaagtgaaaagatggagaagagctctcacACAAGTAGCCAATTTCTCTGGTTGGGATATGATGAATAAGTCACAATATGATGAGattgaaaaaattgttcaagagatactaagtaaattgggtcgcaatttttcaagtcttccaaatgatctagttgggatggaatctccggttgaagaactagaaaaacttttacttttggacccagttgaagatgttcgcattgtaggaatttttgggatgggcggaataggaaagacaactctcgcttctgttttatatcatagaatctctcatcagtatgatgcctgctgttttattgataatgtaagcaaagtttatagagattgcggtccaactggtgtggcaaagcagctgctccatcaaactctgaatgaagaaaaccttcagatatgcaatcttcataacgcagctaatttgatacaaagtaggctacgttatgtaaagacacttatagttcttgataatgttgatgaagtcaaacaacaagaaaaattagttttgaatcgtgaatggttaggtgcagggagtagaatcgtcataatttctagagatatgcataacttaaaagagtatggagtgacttcagtctacaaagttcaactcttaaatggtgctgattctcttaaattgttttgtaaaaaggctttcaattgtgatgatattgtgggaggttacaaagagttgacatatgatgtgttaaaatatgctaatagcctaccactagcaatcaaagtactaggttcatttttgtgtggtcgaagtgtctcagagtggagaagtgccttagttagactgaaagagaatccaaacaaagatatcttggatgtgcttcaaataagttatgatgggctacaggaattggaaaagcaaatatttttagatattgcttgtttcttcagcgggtacgaggagttatatgtgaagaaagttctagattgttgtggatttcatgctgaaattggaataagagttctccttgataaatcactcatagacaattcacatggattcattgaaatgcatgatttgttgaaagttttgggcagaaaaattgttaaaggcaattcacccaatgagccacgaaagtggagcaggttgtggctccctaaggatttctatgatatgtcgaagacaacGGAAACTACAAACAATGAAGCCATTGTTTTAGACATGTCCAGAGAGATGGGAATATTGATGACTATTGAAGCTGAAGCATTGTCCAAAATGAGTAACCTTAGGTTACTCATACTCCATGATGTGAAGTTTATGGGAAACCTTGATTGTCTCTCCAATAAACTACAATTTCTCCAGTGGTTTAAGTATCCTTTCTCCAATTTACCATCAAGTTTTCAGCCAGACAAACTGGTAGAATTGATCTTGCAACATAGCAACATCAAAAAACTATGGAAAGGCATAAAGTATCTGCCAAATTTAAGAGCTTTGGATCTCAGTGATTCCAAGAATCTTATTAAGGTTCCAGACTTTAGAGGGGTCCCTAATCTTGAGTGGATAATTCTTGAAGGATGCACAAAACTTGCATGGATCCATCCATCGGTTGGTCTTTTAAGAAAGCTTGCTTTCCTGAATTTGAAAAACTGCAAAAATCTAGTAAGTCTTCCCAACAATATTTTGGGTCTAAGTTCTCTGGAATATCTAAATATCTCTGGTTGTCCAAAAATATTTAGTAATCAACTGTTAGAGAACCCAATAAATGAGGAGTATTCCATGATTCCTAATATCAGGGAAACTGCCATGCAATCCCAGTCAACATCCTCCTCCATCATCAAGAGATTCATACCTTTCCATTTCTCCTACTCTAGAGGGTCTAAAAATTCAGGTGGTTGTTTGTTGCCTTCCTTGCCTAGCTTCTCTTGTTTGCATGACCTTGATCTAAGTTTCTGCAATCTAAGTCAAATCCCTGATGCTATTGGATCCATGCTTTCTTTAGAAACCTTAAATTTAGGGGGAAACAAATTTGTTAGCCTCCCCAGTACCATCAACAAGCTTTCCAAACTTGTACATTTAAACTTGGAGCATTGCAAGCAATTAAGATATTTGCATGAGATGCCAACACCTACTGCCTTGCCAGTAATAAGAGGAATCTATTCTTTTGCTCATTACGGAAGAGGATTAATTATTTTCAACTGTCCTAAAATTGTTGATATTGAACGTTGTCGTGGCATGGCATTTTCTTGGTTGTTACAAATCCTGCAGGTGAGCCAAGAGTCAGCTACCCCTATTGGTTGGATTGATATTATTGTTCCTGGAAATCAAATACCAAGATGGTTCAACAATCGATGTGTTGGTAATTCAATAAGCCTAGACCCGTCTCCCATTATGCTTGACAATAACTGGATTGGCATTGCTTGCAGCGTGGTATTTGTGGTATTTGATGATCCAACTAGTTTGGATAATGATTGGAAATCCTCTATAAGCATTGGTTTTGAGACAAAATCTTATTCATCCCGGGGTTCACCGCTCTATATTCCAATACTTCTTGATAGGAATCTTGTAACGGTTAAATTGCATCACTTGTGGTTACTCTATTTGACTAGGGGAGAATTTTTTTCCTATTTTAAAATAGAAAAAATGCTTGATCTTTATGGCATCAAAATGCATGCCATGGTCGACAACTCTCAAGGTTTGCACTTGGAGGTGTGCAGTTGTGGATATCAGTGGGTATTTGAGGAGGATCTGCAAAACTTAAACCCAACAATAATGCGTAGAGGATACAGCAACATTCCAGTTGATGATGATTTTGTGAACGGCGGTTCAATTCTTTCATTAGAAGCTGGAAGCTAG 3264 0.208 MASNSMVPCSTSPAMIKKYEVFVSFRGKDTRNNFTDHLFGALQRKGILTFRDDTKLKKGERILSSLMQAIEGSQIFVIVFSKNYASSTWCLRELEKILDCVRVPGKRVLPIFYDVDPSEVRKQTGDYGKAFTKHEERFKDDVEKMEEVKRWRRALTQVANFSGWDMMNKSQYDEIEKIVQEILSKLGRNFSSLPNDLVGMESPVEELEKLLLLDPVEDVRIVGIFGMGGIGKTTLASVLYHRISHQYDACCFIDNVSKVYRDCGPTGVAKQLLHQTLNEENLQICNLHNAANLIQSRLRYVKTLIVLDNVDEVKQQEKLVLNREWLGAGSRIVIISRDMHNLKEYGVTSVYKVQLLNGADSLKLFCKKAFNCDDIVGGYKELTYDVLKYANSLPLAIKVLGSFLCGRSVSEWRSALVRLKENPNKDILDVLQISYDGLQELEKQIFLDIACFFSGYEELYVKKVLDCCGFHAEIGIRVLLDKSLIDNSHGFIEMHDLLKVLGRKIVKGNSPNEPRKWSRLWLPKDFYDMSKTTETTNNEAIVLDMSREMGILMTIEAEALSKMSNLRLLILHDVKFMGNLDCLSNKLQFLQWFKYPFSNLPSSFQPDKLVELILQHSNIKKLWKGIKYLPNLRALDLSDSKNLIKVPDFRGVPNLEWIILEGCTKLAWIHPSVGLLRKLAFLNLKNCKNLVSLPNNILGLSSLEYLNISGCPKIFSNQLLENPINEEYSMIPNIRETAMQSQSTSSSIIKRFIPFHFSYSRGSKNSGGCLLPSLPSFSCLHDLDLSFCNLSQIPDAIGSMLSLETLNLGGNKFVSLPSTINKLSKLVHLNLEHCKQLRYLHEMPTPTALPVIRGIYSFAHYGRGLIIFNCPKIVDIERCRGMAFSWLLQILQVSQESATPIGWIDIIVPGNQIPRWFNNRCVGNSISLDPSPIMLDNNWIGIACSVVFVVFDDPTSLDNDWKSSISIGFETKSYSSRGSPLYIPILLDRNLVTVKLHHLWLLYLTRGEFFSYFKIEKMLDLYGIKMHAMVDNSQGLHLEVCSCGYQWVFEEDLQNLNPTIMRRGYSNIPVDDDFVNGGSILSLEAGS 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01186 1087 SMART till_3 18 161 IPR000157 GO:0007165
Gma12g01186 1087 Pfam NB-ARC domain 201 425 IPR002182 GO:0043531
Gma12g01186 1087 Gene3D - 356 439 IPR042197 -
Gma12g01186 1087 Gene3D Ribonuclease Inhibitor 722 855 IPR032675 -
Gma12g01186 1087 Gene3D Ribonuclease Inhibitor 522 721 IPR032675 -
Gma12g01186 1087 Pfam TIR domain 18 192 IPR000157 GO:0007165
Gma12g01186 1087 Gene3D - 15 187 IPR035897 -
Gma12g01186 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 449 IPR027417 -
Gma12g01186 1087 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 194 1059 - -
Gma12g01186 1087 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 194 1059 IPR044974 GO:0006952
Gma12g01186 1087 Pfam Leucine rich repeat 780 835 IPR001611 GO:0005515
Gma12g01186 1087 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Gma12g01186 1087 ProSiteProfiles Leucine-rich repeat profile. 802 823 IPR001611 GO:0005515
Gma12g01186 1087 SUPERFAMILY L domain-like 543 853 - -
Gma12g01186 1087 SUPERFAMILY "Winged helix" DNA-binding domain 426 528 IPR036390 -
Gma12g01186 1087 Pfam C-JID domain 908 1053 IPR045344 -
Gma12g01186 1087 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 164 IPR035897 -
Gma12g01186 1087 Pfam Leucine Rich Repeat 608 627 IPR011713 -
Gma12g01186 1087 Gene3D - 188 348 IPR027417 -
Gma12g01186 1087 PRINTS Disease resistance protein signature 390 404 - -
Gma12g01186 1087 PRINTS Disease resistance protein signature 627 643 - -
Gma12g01186 1087 PRINTS Disease resistance protein signature 221 236 - -
Gma12g01186 1087 PRINTS Disease resistance protein signature 297 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01186 Gma-Chr12 15186006 15196724 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01186 17 829 WRKY Transcription Factor Family AT4G12020 31.748 2.89e-91 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01186 - - gmx:100820213 2175.59