Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01184 ATGGCTTGCTCTTCATCACACGCGAAGAATTTtgatgtgtttgtgagctttagaggtctggatactcgtaatagtttcactgatcatctttttgctgctcttcaaaggaaaggcattgttgctttcagggataaccaaaatatcaacaaaggggaactcttggagcctgagctcttgcaggcaatcgaaggatcacatgttttcattgttgtcttctcaaaagactatgcatcatccacatggtgcttgaaagagctgagaaagatttttgatagggttgaagaaacagggcgaagtgtactccctattttctatgatgtcactccttctgaggtccggaaacagagtggtaagtttggaaaagcttttgctgaatacgaagaaaggttcaaagatgatttggaaatggtaaataaatggaggaaagctCTCAAAGCAATTGGCAATCGTAGTGGTTGGGATGTACAAAATAAGCCAGAACATGAAGAAATTGAAAAAATTGTTGAAGAAGTAATGAACCTACTGGGTCATAATCAAATTTGGAGTTTCAGTGGTGatttagttgatatggactctcgtgtgaaacaattggaagagcttctagatttgagcgcaaatgatgttgttcgcgttgtgggaatttgggggatgagtggagtaggaaagacaacACTTGTTACTGCTTTGTTTGGTAAAATCTCTCCTCAATATGATGCTCGTTGTTTTATTGATGATTTAAACAAATATTGTGGGGATTTTGGTGCAACAagtgcacaaaaacaacttctttgtcaagctctaaatcaaggaaatatggagatacacaatctttcccatggaaccatgttgataagaactaggctacgtcgcttaaagacacttattgttcttgataatgttgatcaggttgaacaattagagaatttggctttgcatcctgaatatctaggtgaagggagtagaatcatcataatctctaaaaatatgcatatcttaaaaaattatggagtatataaagtttacaatgttcaactccttaagaaggataaggctcttcaattactttgcaaaaaagttttcaaatccgatgatattgagaaagggtatgaagaggtaacatatgatgtactgaagtatgccaatggccttccactagcaatcaaagtattgggctcatttttgtttgaccgagatgtttttgagtggagaagtgcattaactagaatgaaagaaaatccaagtaaagatatcatggatgtgttgcgaataagttttgatggattggagacaatggaaaaagaaatatttctagatattgtttgtttcttTTTAAGTGGTCAATTCCAGGATTATGACCGGCGGTCTATACCTCCTGAGAAAATTCTAGGCTATCGGGGATTTTATCCCAAAATTGGTATGAAAgttctagttgaaaaatcactcataagttttgatcgttatagtaatattcaaatgcatgacttgttgaaagagttgggcaagattattgtccgagaaaaggcacccaagcaacctagaaagtggagcaggttatgggactacaaggatctccaaaaagttatgatagaaaataagGAGGCCAAAAATCTTGAAGCCATATGTATTTGTAATGAAAAATACCAAGATGAGTTTCTACAACAAACAATGAAAGTAGATgctctatcaaaaatgattcatcttaagttactcatgcttaagaatgtgaatttttcaggaattctcaattatctttctaatgaattgagatatttatactgggataactatcctttcttgtctatgccatcaagttttcatcccgatcaacttgtcgaattgattttgccttatagcaatatcaaacaattatggAAAGACACAAAGCATCTGCCGAATTTGAAAGATTTAGATCTCAGCTACTCCCAAAATCTTATTGAGATGCCAGACTTAAGTGGATTCCCACATCTTAGGAATCTCAATCTCCAAGGATGTACAAAAATTGTACGCATCGATCCATCCATTGGTACCCTAAGAGAGCTTGATTTTCTGAATTTGAGGAATTGTAAAAATCTTTTCCTTAATCTGAATATAATTTTTGGGCTAAGTTCTCTTAAGGTCCTTAATCTCTCAGGCTGTTCAAAATTACTTACTAATAGGCTGTTACAGAAACCAAGGGAGACAGAACATATGGAAAAAATTGATGAAAATAGAAGTTCCATCCAATTATCAACATCCTCTGTATACGAAATGCTAATGCTGCCTTTCTATATTTTCTCCTCTTGGAAACAAGTAGATTCACTGGGTTTGTTGGTTCCTTATTTATCTCGTTTCCCACGTTTGTTTGTTCTTGATCTGAGCTTCTGCAATCTACTTCAAATCCCTGATGCTATTGGGAACTTACATTCTTTAGTAAAATTAAATTTGGGGGGAAACAAATTTGTGATACTACCTAATACCATTAAGCAACTTTCCGAACTTCGATCTCTAAACTTAGAGCACTGCAAGCAGCTGAAATATTTGCCCGAGCTTCCAACACCAAAAAAGAGAAAAAATCACAAATATTACGGGGGATTAAACACTTTCAATTGCCCCAATTTGAGTGAAATGGAACTTATTTATCGCATGGTTTTTTCTTGGATGACACAAATCTTTGAGGTACACTGGCAATCCTCTCTTTCCTTTAATAGGCTTGATATTGTTATTCCTGGAACTGAAATTCCAAGGTGGTTCAGTAAACAAAATGAGGGTGATTCAATAAGCATGGACCCGTCTCCTCTTATGGAAGACCCAAATTGGATAGGTGTTGCCTGTTGTGCATTATTAGTGGCACATCATGATCCGTCTAATATTGGTGAATTAGATCACTTGCTGATTTTGTTTGCCTCTCGGGAAGAATTCCTTCTTTTTCCTAGACACGAAACTGATATGCATGGTCTTGATACAAGGGGATTCACAACTTGGATACGTGACCACCCTAAAGGTTTGCGGTTGCAGTTCCATCAAAGAAATTCTAATCCATTTGAGGAGTGTAGTACCAGAGCCACCAATCGCTCCACCAATTTCCAGGGCTTGGATGAATTGCAAGATTCAAAGCAAAGTTACTGTGCATTTGGAATTGAATGGACATTACAGCAAGATCAATTCAATGGATTTTTACTTGGTCTTGACTCTTGA 3174 0.2045 MACSSSHAKNFDVFVSFRGLDTRNSFTDHLFAALQRKGIVAFRDNQNINKGELLEPELLQAIEGSHVFIVVFSKDYASSTWCLKELRKIFDRVEETGRSVLPIFYDVTPSEVRKQSGKFGKAFAEYEERFKDDLEMVNKWRKALKAIGNRSGWDVQNKPEHEEIEKIVEEVMNLLGHNQIWSFSGDLVDMDSRVKQLEELLDLSANDVVRVVGIWGMSGVGKTTLVTALFGKISPQYDARCFIDDLNKYCGDFGATSAQKQLLCQALNQGNMEIHNLSHGTMLIRTRLRRLKTLIVLDNVDQVEQLENLALHPEYLGEGSRIIIISKNMHILKNYGVYKVYNVQLLKKDKALQLLCKKVFKSDDIEKGYEEVTYDVLKYANGLPLAIKVLGSFLFDRDVFEWRSALTRMKENPSKDIMDVLRISFDGLETMEKEIFLDIVCFFLSGQFQDYDRRSIPPEKILGYRGFYPKIGMKVLVEKSLISFDRYSNIQMHDLLKELGKIIVREKAPKQPRKWSRLWDYKDLQKVMIENKEAKNLEAICICNEKYQDEFLQQTMKVDALSKMIHLKLLMLKNVNFSGILNYLSNELRYLYWDNYPFLSMPSSFHPDQLVELILPYSNIKQLWKDTKHLPNLKDLDLSYSQNLIEMPDLSGFPHLRNLNLQGCTKIVRIDPSIGTLRELDFLNLRNCKNLFLNLNIIFGLSSLKVLNLSGCSKLLTNRLLQKPRETEHMEKIDENRSSIQLSTSSVYEMLMLPFYIFSSWKQVDSLGLLVPYLSRFPRLFVLDLSFCNLLQIPDAIGNLHSLVKLNLGGNKFVILPNTIKQLSELRSLNLEHCKQLKYLPELPTPKKRKNHKYYGGLNTFNCPNLSEMELIYRMVFSWMTQIFEVHWQSSLSFNRLDIVIPGTEIPRWFSKQNEGDSISMDPSPLMEDPNWIGVACCALLVAHHDPSNIGELDHLLILFASREEFLLFPRHETDMHGLDTRGFTTWIRDHPKGLRLQFHQRNSNPFEECSTRATNRSTNFQGLDELQDSKQSYCAFGIEWTLQQDQFNGFLLGLDS 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01184 1057 Pfam Leucine rich repeat 778 835 IPR001611 GO:0005515
Gma12g01184 1057 Pfam TIR domain 10 173 IPR000157 GO:0007165
Gma12g01184 1057 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 942 IPR044974 GO:0006952
Gma12g01184 1057 ProSiteProfiles TIR domain profile. 9 175 IPR000157 GO:0007165
Gma12g01184 1057 Gene3D - 176 340 IPR027417 -
Gma12g01184 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 439 IPR027417 -
Gma12g01184 1057 SMART till_3 10 150 IPR000157 GO:0007165
Gma12g01184 1057 SUPERFAMILY "Winged helix" DNA-binding domain 416 527 IPR036390 -
Gma12g01184 1057 SUPERFAMILY L domain-like 557 897 - -
Gma12g01184 1057 Pfam Leucine Rich Repeat 609 628 IPR011713 -
Gma12g01184 1057 Gene3D - 345 429 IPR042197 -
Gma12g01184 1057 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 153 IPR035897 -
Gma12g01184 1057 Pfam NB-ARC domain 194 415 IPR002182 GO:0043531
Gma12g01184 1057 PRINTS Disease resistance protein signature 211 226 - -
Gma12g01184 1057 PRINTS Disease resistance protein signature 699 715 - -
Gma12g01184 1057 PRINTS Disease resistance protein signature 380 394 - -
Gma12g01184 1057 PRINTS Disease resistance protein signature 287 301 - -
Gma12g01184 1057 Gene3D Ribonuclease Inhibitor 505 739 IPR032675 -
Gma12g01184 1057 Gene3D Ribonuclease Inhibitor 759 963 IPR032675 -
Gma12g01184 1057 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 942 - -
Gma12g01184 1057 Gene3D - 7 175 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01184 Gma-Chr12 15169080 15173863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01184 6 829 WRKY Transcription Factor Family AT4G12020 30.153 1.19e-86 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01184 - - gmx:100819678 1859.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01184 12 15169080 15173863 Gma12g01184 12 15169080 15173863 ECH
Gma12g01184 12 15169080 15173863 Gma06g02514 06 48057493 48059844 GST