Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01183 ATGAGCCGCAACATGAACAATTTTACACATTTGCTTGGGCCATGGCAAACAGATTTTAGATCCAATGATGGCCACACTTTCAATCATCGTGAATCCAATGAGGTGCCTGTGTTTTACAGATCTCACTCTACTCATGTCACTGATGACAGAAGTTCAGGTGTATTAGCTCGACAACGGTTTTCGGACTTCAGAAATCCTTTAGGATTCCACAGTATACCAAATTTTCCAGCACCACCACCTAGAAGACAACAAATTCATGTGCACAATGAGGATATGAGAAGGCTTAGAGAGATTTTCCTTCAGCCACCTCAAAGATCCACATTCCAAATAAACACACAAGCTCCCCCACCGGTAGAAATTTCCAAATCAACGGCTTTGAGCAAGCTTAAGAAAGTAGTCCATGACCCTCCACCAAAGAGGTATGCTAGGAGGGTGAGCTTATATTACAGAAACAATGTTGCAAAGCCTTGGAAAGAGAAGGAGAAAGAAAAGGATGAAGATGGCAAGAGTTGTGCTATTTGCTTGGAAGATTTTGAGCCCAGTGAGGAGGTCATGCTCACTCCTTGCAACCACATGTTTCATGAGGATTGCATTGTACCATGGCTAACAAGTAAGGGCCAGTGCCCAGTTTGTAGGTTTGTGATTTTTGAGATAGAAAGGGGGAATCAATCATCCTTCAATAACAATGACATTGCCAATTTGGAACCTAGCAACATTATTAATAGAGAGTTTTTGTCAATTTTGAGGGCAATGGAAGAAGATTTTCAATTGAGCAGTATGACTTACTAA 789 0.4132 MSRNMNNFTHLLGPWQTDFRSNDGHTFNHRESNEVPVFYRSHSTHVTDDRSSGVLARQRFSDFRNPLGFHSIPNFPAPPPRRQQIHVHNEDMRRLREIFLQPPQRSTFQINTQAPPPVEISKSTALSKLKKVVHDPPPKRYARRVSLYYRNNVAKPWKEKEKEKDEDGKSCAICLEDFEPSEEVMLTPCNHMFHEDCIVPWLTSKGQCPVCRFVIFEIERGNQSSFNNNDIANLEPSNIINREFLSILRAMEEDFQLSSMTY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01183 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 228 IPR013083 -
Gma12g01183 262 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 262 - -
Gma12g01183 262 SMART ring_2 171 211 IPR001841 -
Gma12g01183 262 ProSiteProfiles Zinc finger RING-type profile. 171 212 IPR001841 -
Gma12g01183 262 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 2 262 - -
Gma12g01183 262 SMART ringv_2 170 212 IPR011016 GO:0008270
Gma12g01183 262 Pfam Ring finger domain 170 212 IPR001841 -
Gma12g01183 262 CDD RING-H2_PA-TM-RING 171 212 - -
Gma12g01183 262 SUPERFAMILY RING/U-box 159 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01183 Gma-Chr12 15147250 15148771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01183 126 255 C3H Transcription Factor Family AT3G58720 47.826 4.79e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01183 - K11982 gmx:100819139 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01183 12 15147250 15148771 Gma12g01183 12 15147250 15148771 ECH