Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01182 ATGAGGGAAATAAAGGTGCAGAAACTCGTCCTCAATATCTCCGTTGGTGAGAGTGGAGATCGTCTCACCAGAGCCGCCAAGGTGTTGGAACAGCTTAGTGGCCAAACCCCAGTGTTTTCCAAAGCAAGGTACACTGTTCGGTCCTTTGGGATTAGAAGAAATGAGAAGATTGCATGCTATGTCACTGTTAGAGGTGATAAGGCTATGCAACTTTTGGAGAGTGGTTTAAAGGTGAAGGAATATGAACTTCTCAGAAGGAACTTCAGTGATACTGGCTGCTTCGGCTTCGGTATTCAGGAGCATATTGATTTGGGAATCAAGTATGATCCTTCAACTGGTATTTACGGAATGGATTTCTTTGTTGTTCTGGAGCGTCCTGGCTATCGCGTGGGACGTCGCCGAAGGTGCAAGTCCCGTGTTGGAATTCAGCACCGTGTCACAAAGGAGGATGCTATGAAGTGGTTCCAGGTGAAATATGAGGGAGTGATCCTTAACAAGTCTCAGGCAATTGTTTAG 516 0.4612 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQAIV 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01182 171 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 1 170 IPR002132 GO:0003735|GO:0005840|GO:0006412
Gma12g01182 171 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 162 IPR002132 GO:0003735|GO:0005840|GO:0006412
Gma12g01182 171 SUPERFAMILY RL5-like 1 163 IPR022803 -
Gma12g01182 171 Pfam ribosomal L5P family C-terminus 56 154 IPR031309 -
Gma12g01182 171 Pfam Ribosomal protein L5 1 52 IPR031310 -
Gma12g01182 171 ProSitePatterns Ribosomal protein L5 signature. 29 45 IPR020929 GO:0003735|GO:0005840|GO:0006412
Gma12g01182 171 Gene3D - 1 167 IPR022803 -
Gma12g01182 171 PANTHER 60S RIBOSOMAL PROTEIN L11-1 1 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01182 Gma-Chr12 15140779 15142461 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01182 1 171 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 94.737 5.12e-121 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01182 K02868 - gmx:100810082 323.553