Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01181 ATGTTTGGGACAGGGTTTTCTCCTTCTTCTCCTCCCTCTGCCTGCAGCGGTGCAACCTATCAGCCTCCAAATCCAATGGCTTCAGAGAAGAAACTGTCGAACCCAATGAGGGAGATGAAGGTGCAGAAGCTCGTTCTCAATATCTCTGTTGGAGAGAGTGGAGATCGTCTCACCAGAGCCGCCAAGGTGTTGGAACAGCTTAGTGGCCAAACCCCAGTGTTTTCCAAAGCAAGGTACACTGTTCGTTCCTTTGGGATTAGAAGAAATGAGAAGATTGCATGCTATGTCACTGTCAGAGGTGACAAGGCGATGCAACTTTTGGAGAGTGGTTTGAAGGTGAAGGAATATGAACTTCTCAGAAGGAACTTCAGTGATACTGGTTGCTTCGGCTTTGGTATTCAGGAGCATATCGATTTGGGAATCAAGTATGATCCTTCAACTGGTATTTATGGAATGGATTTCTTTGTTGTTCTGGAGCGTCCTGGCTATCGTGTGGGACGTCGCCGAAGGTGCAAGTCCCGTGTTGGAATTCAGCACCGGGTCACAAAGGAGGATGCTATGAAGTGGTTCCAGGTGAAATATGAGGGAGTGATCCTTAACAAGTCTCAGGCAATTGTTTAG 621 0.4734 MFGTGFSPSSPPSACSGATYQPPNPMASEKKLSNPMREMKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQAIV 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01181 206 Gene3D - 26 202 IPR022803 -
Gma12g01181 206 MobiDBLite consensus disorder prediction 1 30 - -
Gma12g01181 206 Pfam ribosomal L5P family C-terminus 91 189 IPR031309 -
Gma12g01181 206 ProSitePatterns Ribosomal protein L5 signature. 64 80 IPR020929 GO:0003735|GO:0005840|GO:0006412
Gma12g01181 206 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 16 205 IPR002132 GO:0003735|GO:0005840|GO:0006412
Gma12g01181 206 MobiDBLite consensus disorder prediction 1 28 - -
Gma12g01181 206 Pfam Ribosomal protein L5 34 87 IPR031310 -
Gma12g01181 206 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 18 197 IPR002132 GO:0003735|GO:0005840|GO:0006412
Gma12g01181 206 SUPERFAMILY RL5-like 33 198 IPR022803 -
Gma12g01181 206 PANTHER 60S RIBOSOMAL PROTEIN L11-1 16 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01181 Gma-Chr12 15133531 15137613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01181 26 205 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 95.000 2.91e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01181 K02868 - gmx:100791687 341.273