Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01148 ATGTGGATCAATTATTTAATGCCTAATTTGAAGATAGGTACATTTTCAAAAGAGGAGGAAAATGTCATCATTGAACTTCATGCAGTGCTAGGGAACAGATGGCCTCAAATTGCAGCACTAAGGCCAGGGAGGACAGACAATGAAATAAATAATCTGTGGAATTCTTGCTTAAAGAAGAAACTGAGGCAAAGAGGAATACACCCTGTGACACACAACCCACTGTCAAAGGTTGAGAATAGAGATGAGGGCAAAACAAGGAGGCAAGAATTATCCCATGAACTAAACCTCCTGAATTCTGAGAGCTTCAACTCAGATGAAGGGTCCTATGAGCAGAGACCATCATCAATTGCCCCCAAAGCCTATGACATGGAAGGCTGTTGCATCTCCAAGATTAATAACACAAAAAATGATACCAACTTGATGCCCAATTGCTCCAACAAAGACATGAAAACTGCAAGACCCCTTGATATAAACTCAAACTCTAAGTTTACAATTACTTTCAATGTCATGTCCATTCTTCCACCTACAACAACCTCATTATGTCCAACTACTTCTTTTTGCTACAAGCCATCACTTGGTGTCCCTTCAAAAGATATTTCAACACCCTCTTCTCTCACCACATTATCTTTTATAGTGCTTATTGAGAACATTATCCAAACTAGTGCTAAAGAAATTTTCCCTAGTTACATTGGTCAACTAGATGAAGAGAGTGTTACAGGAATTCAGTCATCAGCTAGATTATCATGGCTACATCTCATTGATTTGAAAATAGCTTTTGAAAAAAGGATTAAGTCTTTGGTAGACCATTCTGGGATCTTGCTATCCTTTGATGATGATATCATGCAAAAAAATTCTTCTCTATCTGTATTTTGTGATCATCCAGATTGGCTTGATCTATGGGCTGAAATAGAGCTAGGTGATGCCCTAGGTAAGTTGAAACCAGACATCCAAGATGAGAATAATTGCAGAAAGAAAGTTCAAAGTGTGGTTCTTTCATCCTATAGTGATGATCACAAGTCTCCTCTGATTTCTAATGCCTTTCTTCGCCATCTAGCATCTATTATTGATCGATGCCGATCATTGCCTAGTGTATTTTTGAGGTCAAAATTTCTCAGATTTAGAGGTGTTTCTATTATAAGAAATTTTTTTGATTCCATACTTATCCGCTGCCAAGAAGCTAAAGGTTTGACTACCTTAACCGATGATGATTCTGTAATTAAAGTTACAATTTCTGTCAATGTTGCTCATTCCTTTCAATTTGTTCTAAAGGAATGGTTTGAGGATGTCTTTTTCCTTGAGATGGGAATGGATGAGGATGATAAAACAGAATTGGAAAGTAATTCAAATAGTTAtgaaggaaattga 1365 0.3678 MWINYLMPNLKIGTFSKEEENVIIELHAVLGNRWPQIAALRPGRTDNEINNLWNSCLKKKLRQRGIHPVTHNPLSKVENRDEGKTRRQELSHELNLLNSESFNSDEGSYEQRPSSIAPKAYDMEGCCISKINNTKNDTNLMPNCSNKDMKTARPLDINSNSKFTITFNVMSILPPTTTSLCPTTSFCYKPSLGVPSKDISTPSSLTTLSFIVLIENIIQTSAKEIFPSYIGQLDEESVTGIQSSARLSWLHLIDLKIAFEKRIKSLVDHSGILLSFDDDIMQKNSSLSVFCDHPDWLDLWAEIELGDALGKLKPDIQDENNCRKKVQSVVLSSYSDDHKSPLISNAFLRHLASIIDRCRSLPSVFLRSKFLRFRGVSIIRNFFDSILIRCQEAKGLTTLTDDDSVIKVTISVNVAHSFQFVLKEWFEDVFFLEMGMDEDDKTELESNSNSYEGN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01148 454 MobiDBLite consensus disorder prediction 94 111 - -
Gma12g01148 454 SUPERFAMILY Homeodomain-like 2 64 IPR009057 -
Gma12g01148 454 Coils Coil 80 100 - -
Gma12g01148 454 PANTHER RAD50-INTERACTING PROTEIN 1 RINT-1 221 451 IPR007528 GO:0006888|GO:0006890|GO:0070939
Gma12g01148 454 PANTHER RINT1-LIKE PROTEIN MAG2 221 451 - -
Gma12g01148 454 Pfam Myb-like DNA-binding domain 13 56 IPR001005 -
Gma12g01148 454 CDD SANT 14 54 IPR001005 -
Gma12g01148 454 MobiDBLite consensus disorder prediction 67 113 - -
Gma12g01148 454 SMART sant 11 59 IPR001005 -
Gma12g01148 454 ProSiteProfiles RINT1/TIP20 domain profile. 224 454 IPR007528 GO:0006888|GO:0006890|GO:0070939
Gma12g01148 454 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 61 IPR017930 -
Gma12g01148 454 Gene3D - 14 90 - -
Gma12g01148 454 MobiDBLite consensus disorder prediction 74 93 - -
Gma12g01148 454 ProSiteProfiles Myb-like domain profile. 7 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01148 Gma-Chr12 14389414 14393569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01148 2 101 MYB Transcription Factor Family AT4G01680 64.000 2.57e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma12g01148 Myb_DNA-binding 4.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01148 K20474 - gmx:100793116 411.764