Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01120 ATGGAAATGGAAGATTTTTTATGGGGTGGTGGCATTGCTGGAGATGCCCCTAAGAGGAAAAGTGATGGTTTTGAAGGAAGCAATGGTGTGATTGGAAGTGGGTGTGGTTCATCTTTCTCTCTGGTTTTGGATAGGGAGAGAGGGGAGCTTGTGGAGGCACCTGTGAGATTGGAAAGGAAGGGGGTGTCCACTGAGAGAAGCATTGAAGCTTTGAAGAGCCATAGTGAGGCAGAGAGGAAAAGGAGGGCAAGGATTAATGCACATCTTGATACGCTTCGCAGTGTGATTCCGGGTGCTATGAAGATGGACAAAGCGTCATTACTCGGTGAGGTTATTAGACATTTGAAAGAGCTGAAGAAGAATGCAGCACAAGCTTGTGAAGGTTTGATGATACCAAAGGACAATGATGAAATAAGTGTTGAAGAACAGGAGGGTGGGTTGAATGGTTTTCCTTATTCGATTAGAGCATCACTATGTTGTGAATATAAACCCGGGCTATTATCTGATATAAAACAAGCACTAGATGCCCTTCATCTTATGATAACAAGGGCAGATATTGCAACATTGGAAGGCAGGATGAAGAATGTCTTTGTGATAATTAGTAGTAAAGAACAAAACTTTGAAGATGCTGCATACCGTCAGTTTCTCGCTGGTTCTGTTCACCAAGCTCTCAAGGCAGTGCTCAATAGATTTTCTGTTTCAGAGGACATTTTAGGAACCAGGAAAAGAAGGAGGATTTCTATATTCAGTTCTTCACCTTTAGAAGATTTTTTGTAA 777 0.4208 MEMEDFLWGGGIAGDAPKRKSDGFEGSNGVIGSGCGSSFSLVLDRERGELVEAPVRLERKGVSTERSIEALKSHSEAERKRRARINAHLDTLRSVIPGAMKMDKASLLGEVIRHLKELKKNAAQACEGLMIPKDNDEISVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIKQALDALHLMITRADIATLEGRMKNVFVIISSKEQNFEDAAYRQFLAGSVHQALKAVLNRFSVSEDILGTRKRRRISIFSSSPLEDFL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01120 258 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 258 - -
Gma12g01120 258 CDD bHLH_AtAIG1_like 64 140 - -
Gma12g01120 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 122 IPR036638 GO:0046983
Gma12g01120 258 SMART finulus 75 124 IPR011598 GO:0046983
Gma12g01120 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 118 IPR011598 GO:0046983
Gma12g01120 258 Pfam Helix-loop-helix DNA-binding domain 73 118 IPR011598 GO:0046983
Gma12g01120 258 Gene3D - 64 126 IPR036638 GO:0046983
Gma12g01120 258 PANTHER TRANSCRIPTION FACTOR BHLH30 16 258 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01120 Gma-Chr12 13605842 13607209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01120 66 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 43.011 5.97e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma12g01120 HLH 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01120 - - gmx:100788819 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01120 12 13605842 13607209 Gma12g01120 12 13605842 13607209 ECH