Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01102 ATGAGGACCGGTGTAGGAGATATTGTTCAAGTAGAAGGAGGGCACATTGTTAGGTCCACAGGTAGAAAAGATCGCCACAGCAAGGTCTACACTTCGAAAGGGCCACGCGATCGCCGCGTTAGACTCTCAGCACACACAGCCATTGAGTTCTATGATGTTCAAGACAGGCTTGGCTATGACAGGCCAAGCAAGGCTGTGGACTGGCTCATCAAGAAGGCAAAGACTTCCATTGACAGGCTTGCTGAGCTTCCTCCATGGCATCCACCTACTCATGAGGAAGAAAAGCAGAATGATGCTGCAGGATCAA 307 0.5016 MRTGVGDIVQVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKTSIDRLAELPPWHPPTHEEEKQNDAAGS 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01102 102 MobiDBLite consensus disorder prediction 19 38 - -
Gma12g01102 102 MobiDBLite consensus disorder prediction 81 102 - -
Gma12g01102 102 ProSiteProfiles TCP domain profile. 22 80 IPR017887 -
Gma12g01102 102 MobiDBLite consensus disorder prediction 85 102 - -
Gma12g01102 102 Pfam TCP family transcription factor 21 84 IPR017887 -
Gma12g01102 102 PANTHER TRANSCRIPTION FACTOR TCP10 5 97 - -
Gma12g01102 102 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 5 97 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01102 Gma-Chr12 13240419 13240725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01102 4 88 TCP Transcription Factor Family AT3G15030 88.235 9.24e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma12g01102 TCP 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01102 - - gmx:100811837 213.386