Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g01101 ATGGATGTCTTCGACAACGATCACGACCATGACGAACCATTTGTTCGATACCACAGTAACGTTAACAGAACAATACTGTACGTGTCCATGGTTTCCTTCATAACAGTCTTGTTTCTCGTCTTCGCACTCTACCTCTACGCCCGGTGCGTCCTAAGGGGCCGGTCCCGCAACCGCGCCGCCATTCGACGTCTCACCATCGCCGCGCTTCACGTCTCTGACCTCGACGCAGCCGCCGCCGCACACCGACACGCCGAACCACCCAACGCGGGCCTCGACCCTGCCATCATAGCGTCGCTTCCAACCTTCGCCTCCAGAACGAAGGTTCTAGAAAATGGTGGTGATGGTGGCGGAGGAGGGGCCACCGTGGTGGAGTGTGCTGTGTGCTTGAGTGCTCTAGAAGGTGAAGAAAAGGCCAAGTTGCTTCCCAACTGCAACCACTTTTTTCACGTGGATTGCATTGATAAGTGGCTGGGTTCCCACTCCACATGTCCTATTTGTCGAGCCGAGGTGAAGCCGCAGCTTCAACCACAGCATCGTGAGGGTCCTGTGGGTCTTTCTCTTCACAGTGCACGTACACTGCTCAGTAGGGTGGATGGTGATGATGATAATAACAACAATGATAACGAATCATCAAAAATTAATGATTCTAATTCACGGTTGAGCTCGTTTAGGAGGATTCTCAGTAGGCAAAGATCTTCAAGAAGAGTCCAACCGTCTGGCCACGATGATGAGGATGGTGGTGTTGATCAAGATTTGGAGAGACAGTGA 768 0.5221 MDVFDNDHDHDEPFVRYHSNVNRTILYVSMVSFITVLFLVFALYLYARCVLRGRSRNRAAIRRLTIAALHVSDLDAAAAAHRHAEPPNAGLDPAIIASLPTFASRTKVLENGGDGGGGGATVVECAVCLSALEGEEKAKLLPNCNHFFHVDCIDKWLGSHSTCPICRAEVKPQLQPQHREGPVGLSLHSARTLLSRVDGDDDNNNNDNESSKINDSNSRLSSFRRILSRQRSSRRVQPSGHDDEDGGVDQDLERQ 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g01101 255 Pfam Ring finger domain 124 167 IPR001841 -
Gma12g01101 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 174 IPR013083 -
Gma12g01101 255 CDD RING-H2_PA-TM-RING 124 167 - -
Gma12g01101 255 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Gma12g01101 255 SUPERFAMILY RING/U-box 124 175 - -
Gma12g01101 255 MobiDBLite consensus disorder prediction 209 227 - -
Gma12g01101 255 PANTHER RING FINGER DOMAIN-CONTAINING 7 255 - -
Gma12g01101 255 MobiDBLite consensus disorder prediction 196 255 - -
Gma12g01101 255 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 7 255 - -
Gma12g01101 255 MobiDBLite consensus disorder prediction 235 255 - -
Gma12g01101 255 SMART ring_2 125 166 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g01101 Gma-Chr12 13183397 13184251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g01101 4 255 C3H Transcription Factor Family AT2G42360 40.000 5.08e-51 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g01101 K19038 - gmx:100811308 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g01101 12 13183397 13184251 Gma12g01101 12 13183397 13184251 ECH